1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' |
GCCAAAACTCATGGTGTTGAGGAAGATATTGCTGATGACCGGCTTCAGCTTTGGATTGGTCGCAACGCACAAGCTCCAAATTCTCATGACGCTATCGATGgtatgatgcttgcatgttactagttactaatctaattaacttttggcaggtattgctgtttaatttactgaaatgctcataggatggacttaaatctcct...
species | Zea mays |
transcript | GRMZM2G126266_T02 |
intron # | 16 |
splice site | 5' |
intron type | U2 |
EST: TTGGATTGGTCGCAACGCACAAGCTCCAAATTCTCATGACGCTATCGATG TGGAGAGAGGTCTAACAGAGCTGAGGAAATTGGGCATAGAGCAGCAACTGTEST: gi|211038527|gb|FL455207.1|FL455207
genomic: TTGGATTGGTCGCAACGCACAAGCTCCAAATTCTCATGACGCTATCGATGgtatgatgct ... atgactgcagTGGAGAGAGGTCTAACAGAGCTGAGGAAATTGGGCATAGAGCAGCAACTGT
EST: TTGGATTGGTCGCAACGCACAAGCTCCAAATTCTCATGACGCTATCGATG TGGAGAGAGGTCTAACAGAGCTGAGGAAATTGGGCATAGAGCAGCAACTGTEST: gi|71324576|gb|DR798987.1|DR798987
genomic: TTGGATTGGTCGCAACGCACAAGCTCCAAATTCTCATGACGCTATCGATGgtatgatgct ... atgactgcagTGGAGAGAGGTCTAACAGAGCTGAGGAAATTGGGCATAGAGCAGCAACTGT
EST: TTGGATTGGTCGCAACGCACAAGCTCCAAATTCTCATGACGCTATCGATG TGGAGAGAGGTCTAACAGAGCTGAGGAAATTGGGCATAGAGCAGCAACTGTEST: gi|211462815|gb|FL454177.1|FL454177
genomic: TTGGATTGGTCGCAACGCACAAGCTCCAAATTCTCATGACGCTATCGATGgtatgatgct ... atgactgcagTGGAGAGAGGTCTAACAGAGCTGAGGAAATTGGGCATAGAGCAGCAACTGT
EST: TTGGATTGGTCGCAACGCACAAGCTCCAAATTCTCATGACGCTATCGATG TGGAGAGAGGTCTAACAGAGCTGAGGAAATTGGGCATAGAGCAGCAACTGTEST: gi|161594381|gb|EY964602.1|EY964602
genomic: TTGGATTGGTCGCAACGCACAAGCTCCAAATTCTCATGACGCTATCGATGgtatgatgct ... atgactgcagTGGAGAGAGGTCTAACAGAGCTGAGGAAATTGGGCATAGAGCAGCAACTGT
EST: TTGGATTGGTCGCAACGCACAAGCTCCAAATTCTCATGACGCTATCGATG TGGAGAGAGGTCTAACAGAGCTGAGGEST: gi|37381602|gb|CF627697.1|CF627697
genomic: TTGGATTGGTCGCAACGCACAAGCTCCAAATTCTCATGACGCTATCGATGgtatgatgct ... atgactgcagTGGAGAGAGGTCTAACAGAGCTGAGG
EST: TTGGATTGGTCGCAACGCACAAGCTCCAAATTCTCATGACGCTATCGATG TGGAGAGAGGTCTAACAGAGCTGAGGAAATTGGGCATAGAGCAGCAACTGTEST: gi|211120830|gb|FL155533.1|FL155533
genomic: TTGGATTGGTCGCAACGCACAAGCTCCAAATTCTCATGACGCTATCGATGgtatgatgct ... atgactgcagTGGAGAGAGGTCTAACAGAGCTGAGGAAATTGGGCATAGAGCAGCAACTGT
EST: TTGGATTGGTCGCAACGCACAAGCTCCAAATTCTCATGACGCTATCGATG TGGAGAGAGGTCTAACAGAGCTGAGGAAATTGGGCATAGAGCAGCAACTGTEST: gi|71324574|gb|DR798986.1|DR798986
genomic: TTGGATTGGTCGCAACGCACAAGCTCCAAATTCTCATGACGCTATCGATGgtatgatgct ... atgactgcagTGGAGAGAGGTCTAACAGAGCTGAGGAAATTGGGCATAGAGCAGCAACTGT
EST: TTGGATTGGTCGCAACGCACAAGCTCCAAATTCTCATGACGCTATCGATG TGGAGAGAGGTCTAACAGAGCTGAGGAAATTGGGCATAGAGCAGCAACTGT
genomic: TTGGATTGGTCGCAACGCACAAGCTCCAAATTCTCATGACGCTATCGATGgtatgatgct ... atgactgcagTGGAGAGAGGTCTAACAGAGCTGAGGAAATTGGGCATAGAGCAGCAACTGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCCAAAACTCATGGTGTTGAGGAAGATATTGCTGATGACCGGCTTCAGCTTTGGATTGGTCGCAACGCACAAGCTCCAAATTCTCATGACGCTATCGATGgtatgatgcttgcatgttactagttactaatctaattaacttttggcaggtattgctgtttaatttactgaaatgctcataggatggacttaaatctcct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT