Sequence
atgc intronic sequence ATGC exonic sequenceGTTACAACCTTATTTCACTTGGATCGGCCAATGTATTTACTAGGATATCTTGCAAACCAAAGCCGTGTCTATCTTATTGATAAGCAATTTAAgtgagttgatctttgtcacctaaatttcacttgtagtttttgtacacaagttctgtggctaatgtacttttttattgcag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G124886_T01 (Zea mays), 5'ss of exon 16
lower sequence: LOC_Os02g11840.1 (Oryza sativa), 5'ss of exon 7
GTTACAACCTTATTTCACTTGGATCGGCCAATGTATTTACTAGGATATCTTGCAAACCAAAGCCGTGTCTATCTTATTGATAAGCAATTTAAgtgagttgatctttgtcacctaaatttcacttgtagtttttgtacac----aagttctgtggctaatgtacttttttattgcag
|| ||||||||||||||||||||||||| |||||||||||| ||||||||||| |||||||||||||||||||||||||| ||||||||||||||||| ||| || || || | || | | ||| || ||||| || ||| | ||| ||| |||||
GTCACAACCTTATTTCACTTGGATCGGCAAATGTATTTACTGGGATATCTTGCTAACCAAAGCCGTGTCTATCTTATTGACAAGCAATTTAAgtgagt----cttggttgtctggtattgtatcatattctgaagccacaatgaacttctgaggttaacttgttttcttactgcag
upper sequence: GRMZM2G124886_T01 (Zea mays), 5'ss of exon 16
lower sequence: LOC_Os02g11830.2 (Oryza sativa), 5'ss of exon 16
GTTACAACCTTATTTCACTTGGATCGGCCAATGTATTTACTAGGATATCTTGCAAACCAAAGCCGTGTCTATCTTATTGATAAGCAATTTAAgtgagttgatctttgtcacctaa-atttcacttgtagtttttgtacacaagttctgtggctaatgtacttttttattgcag
|| ||||||||||||||||||||||||| |||||||||||| ||||||||||| ||||||||||||||||| |||||||| ||||||||||||||||| | ||||| || | ||| | | | || ||||| || ||| | ||| ||| |||||
GTCACAACCTTATTTCACTTGGATCGGCAAATGTATTTACTGGGATATCTTGCTAACCAAAGCCGTGTCTACCTTATTGACAAGCAATTTAAgtgagtct-tggttgtctggtatcgtatcatattcggaagccacaatgaacttctgaggttaacttgttttcttactgcag
upper sequence: GRMZM2G124886_T01 (Zea mays), 5'ss of exon 16
lower sequence: Vv11s0016g04180.t01 (Vitis vinifera), 5'ss of exon 16
GTTACAACCTTATTTCACTTGGATCGGCCAATGTATTTACTAGGATATCTTGCAAACCAAAGCCGTGTCTATCTTATTGATAAGCAATTTAAgtgag-----ttg--atctttgtcacctaaatttcacttgtagtttttgtacacaagttctgtggctaatgtacttttttattgcag
|| || ||| | ||||||||||| ||||| |||||||| ||||||||||||| | ||||| || || |||||||| || || | |||||||||| ||| | || | ||| | ||| | | || | | | ||| || | || | | |||||
GTAACCACCATGTTTCACTTGGACCGGCCTATGTATTTGTTAGGATATCTTGCCAGTCAAAGTCGCGTTTATCTTATAGACAAAGAGTTTAAgtgagggagcttgggagctgcacttctgcaatctgactgcttttgttcttgtaattgatctaaatttatttatgttatcttatgcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|60337834|gb|DN204807.1|DN204807EST: GGATATCTTGCAAACCAAAGCCGTGTCTATCTTATTGATAAGCAATTTAA TGTTGTGGGGTATACTTTACTCCTTAGTTTGATCGAGTATAAAACACTTGT
genomic: GGATATCTTGCAAACCAAAGCCGTGTCTATCTTATTGATAAGCAATTTAAgtgagttgat ... tttattgcagTGTTGTGGGGTATACTTTACTCCTTAGTTTGATCGAGTATAAAACACTTGT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GTTACAACCTTATTTCACTTGGATCGGCCAATGTATTTACTAGGATATCTTGCAAACCAAAGCCGTGTCTATCTTATTGATAAGCAATTTAAgtgagttgatctttgtcacctaaatttcacttgtagtttttgtacacaagttctgtggctaatgtacttttttattgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA