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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATACGAACTTCTTTGCAATGTCTGGCTTTACGGCGGGAGGGTGATGCAgtgagttcagctatttcaaaacgttttcctgtttcttttcccattcttgtagctaattaattgacataattttcag

Basic information

species Zea mays
transcript GRMZM2G115564_T01
intron # 16
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G115564_T02 (Zea mays), 5'ss of exon 16
lower sequence: LOC_Os06g44230.1 (Oryza sativa), 5'ss of exon 16
ATACGAACTTCTTTGCAATGTCTGGCTTTACGGCGGGAGGGTGATGCAgtgagttcagcta-tttcaaaac--gttttcctgtttcttttcccattcttgtagctaat-taattgacataattttcag
|| ||||||||  ||||||||||||||||||| |||||||| |||||||| |||  | | | ||||   |    |||| | |||  || |  ||||  ||    |||| |   || || ||||| |||
ATTCGAACTTCACTGCAATGTCTGGCTTTACGACGGGAGGGAGATGCAgtaagtaaaaccaatttctggattgatttttccgttctttctttcattactgcgattaatatcgctgtcacaatttccag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211090146|gb|FL283408.1|FL283408
EST:     ATACGAACTTCTTTGCAATGTCTGGCTTTACGGCGGGAGGGTGATGCA                         ATTGCAATCCMAAGGCAAAAGGCAGCTTTTCCACCAAATTTTGTGCACTCA
genomic: ATACGAACTTCTTTGCAATGTCTGGCTTTACGGCGGGAGGGTGATGCAgtgagttcag ... taattttcagATTGCAATCCAAAGGCAAAAGGCAGCTTTTCCACCAAATTTTGTGCACTCA