1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' |
CATCAGCTTCACCGAAAGGCAGAGGAAGTGGAAAGAAGAGTTGGACCAGGAACTTGAGAGGGAGAGAGgtagacggaagttttcattatcttttcattattgataatttaccccgatgctgatacaaaaaagttatatatgaattctcctgcag
species | Zea mays |
transcript | GRMZM2G098828_T01 |
intron # | 16 |
splice site | 5' |
intron type | U2 |
EST: CCAGGAACTTGAGAGGGAGAGAG TGCTGAGATTAGCTGGCTGTGGTAAAGAACACCATCCCCAAACAGAGGTTCEST: gi|31363668|gb|CD448025.1|CD448025
genomic: CCAGGAACTTGAGAGGGAGAGAGgtagacggaa ... tctcctgcagTGCTGAGATTAGCTGGCTGTGGTAAAG--CACCATCCCCAAACAGAGGTTC
EST: GCAGAGGAAGTGGAAAGAAGAGTTGGACCAGGAACTTGAGAGGGAGAGAG TGCTGAGATTAGCTGGCTGTGGTAAAGCACCATCCCCAAACAGAGGTTCCAEST: gi|60344956|gb|DN211929.1|DN211929
genomic: GCAGAGGAAGTGGAAAGAAGAGTTGGACCAGGAACTTGAGAGGGAGAGAGgtagacggaa ... tctcctgcagTGCTGAGATTAGCTGGCTGTGGTAAAGCACCATCCCCAAACAGAGGTTCCA
EST: GCAGAGGAAGTGGAAAGAAGAGTTGGACCAGGAACTTGAGAGGGAGAGAG TGCTGAGATTAGCTGGCTGTGGTAAAGCACCATCCCCAAACAGAGGTTCCAEST: gi|78106821|gb|DV525239.1|DV525239
genomic: GCAGAGGAAGTGGAAAGAAGAGTTGGACCAGGAACTTGAGAGGGAGAGAGgtagacggaa ... tctcctgcagTGCTGAGATTAGCTGGCTGTGGTAAAGCACCATCCCCAAACAGAGGTTCCA
EST: GCAGAGGAAGTGGAAAGAAGAGTTGGACCAGGAACTTGAGAGGGAGAGAG TGCTGAGATTAGCTGGCTGTGGTAAAGCACCATCCCCAAACAGAGGTTCCA
genomic: GCAGAGGAAGTGGAAAGAAGAGTTGGACCAGGAACTTGAGAGGGAGAGAGgtagacggaa ... tctcctgcagTGCTGAGATTAGCTGGCTGTGGTAAAGCACCATCCCCAAACAGAGGTTCCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CATCAGCTTCACCGAAAGGCAGAGGAAGTGGAAAGAAGAGTTGGACCAGGAACTTGAGAGGGAGAGAGgtagacggaagttttcattatcttttcattattgataatttaccccgatgctgatacaaaaaagttatatatgaattctcctgcag
- - - - - - - - - - AGAGGA
- - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG