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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCATTTGTGATTGCATTTTCTCTTGGCTTGGGAGCGATTCCGTGGATCATTATGTCTGAGgtatagtttgttcttgctttttatattatacagagcttttaattcgctaatgtgtctttgctatcttatctttatgtaattattatgagtgccacttagc...

Basic information

species Zea mays
transcript GRMZM2G097768_T02
intron # 16
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G097768_T01 (Zea mays), 5'ss of exon 16
lower sequence: LOC_Os05g50280.1 (Oryza sativa), 5'ss of exon 15
GCATTTGTGATTGCATTTTCTCTTGGCTTGGGAGCGATTCCGTGGATCATTATGTCTGAGgtatagtttg-ttcttgctttttatattatacagagcttttaattcg---ctaatgtgtctttgctatcttatct--ttatgtaattattatgagtgccactta-gc------
|||||||||||| ||||||||||||| |||||||| || || |||||||| ||||||||||||| || |  | ||| ||  | ||||||        | ||| |      |||  |    |||  | |   || |   |  |  |||  | |   ||||    | ||      
GCATTTGTGATTTCATTTTCTCTTGGTTTGGGAGCCATACCATGGATCATAATGTCTGAGgtattgtataatccttcctgctaatattagctgagattattactgaaggcctagagcaaatttattgttgaatttgactgggagattgatgtatttgccttgcatgccttcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|21330477|gb|BQ485858.1|BQ485858
EST:     TTGCATTTTCTCTTGGC-TGGGAGCGATTCCGTGGATCATTATGTCTGAG                         ATCCTTCCTGTTAACATCAAGAGCCTTGCTGGAAGTGTTGCGACCCTGGCG
genomic: TTGCATTTTCTCTTGGCTTGGGAGCGATTCCGTGGATCATTATGTCTGAGgtatagtttg ... ttcctttcagATCCTTCCTGTTAACATCAAGAGCCTTGCTGGAAGTGTTGCGACCCTGGCG
EST: gi|211113971|gb|FL431731.1|FL431731
EST:     CTTGGCTTGGGAGCGATTCCGTGGATCATTATGTCTGAG                         ATCCTTCCTGTTAACATCAAGAGCCTTGCTGGAAGTGTTGCGACCCTGGCG
genomic: CTTGGCTTGGGAGCGATTCCGTGGATCATTATGTCTGAGgtatagtttg ... ttcctttcagATCCTTCCTGTTAACATCAAGAGCCTTGCTGGAAGTGTTGCGACCCTGGCG
EST: gi|101389585|gb|EB816725.1|EB816725
EST:     TGCATTTTCTCTTGGCTTGGGAGCGATTCCGTGGATCATTATGTCTGAG                         ATCCTTCCTGTTAACATCAAGAGCCTTGCTGGAAGTGTTGCGACCCTGGCG
genomic: TGCATTTTCTCTTGGCTTGGGAGCGATTCCGTGGATCATTATGTCTGAGgtatagtttg ... ttcctttcagATCCTTCCTGTTAACATCAAGAGCCTTGCTGGAAGTGTTGCGACCCTGGCG
EST: gi|18166608|gb|BM336447.1|BM336447
EST:     TTGCATTTTCTCTTGGCTTGGGAGCGATTCCGTGGATCATTATGTCTGAG                         ATCCTTCCTGTTAACATCAAGAGCCTTGCTGGAAGTGTTGCGACCCTTTTT
genomic: TTGCATTTTCTCTTGGCTTGGGAGCGATTCCGTGGATCATTATGTCTGAGgtatagtttg ... ttcctttcagATCCTTCCTGTTAACATCAAGAGCCTTGCTGGAAGTGTTGCGACCCTGGCG
EST: gi|26455414|gb|CA826997.1|CA826997
EST:     TTGCATTTTCTCTTGGCTTGGGAGCGATTCCGTGGATCATTATGTCTGAG                         ATCCTTCCTGTTAACATCAAGAGCCTTGCTGGAAGTGTTGCGACCCTGGCG
genomic: TTGCATTTTCTCTTGGCTTGGGAGCGATTCCGTGGATCATTATGTCTGAGgtatagtttg ... ttcctttcagATCCTTCCTGTTAACATCAAGAGCCTTGCTGGAAGTGTTGCGACCCTGGCG
EST: gi|71766861|gb|DR964798.1|DR964798
EST:     TTGCATTTTCTCTTGGCTTGGGAGCGATTCCGTGGATCATTATGTCTGAG                         ATCCTTCCTGTTAACATCAAGAGCCTTGCTGGAAGTGTTGCGACCCTGGCG
genomic: TTGCATTTTCTCTTGGCTTGGGAGCGATTCCGTGGATCATTATGTCTGAGgtatagtttg ... ttcctttcagATCCTTCCTGTTAACATCAAGAGCCTTGCTGGAAGTGTTGCGACCCTGGCG
EST: gi|211126445|gb|FL284300.1|FL284300
EST:     ATTTTCTCTTGGCTTGGGAGCGATTCCGTGGATCATTATGTCTGAG                         ATCCTTCCTGTTAACATCAAGAGCCTTGCTGGAAGTGTTGCGACCCTGGCG
genomic: ATTTTCTCTTGGCTTGGGAGCGATTCCGTGGATCATTATGTCTGAGgtatagtttg ... ttcctttcagATCCTTCCTGTTAACATCAAGAGCCTTGCTGGAAGTGTTGCGACCCTGGCG
EST: gi|193503179|gb|AM937591.1|AM937591
EST:     TTGCATTTTCTCTTGGCTTGGGAGCGATTCCGTGGATCATTATGTCTGAG                         ATCCTTCCTGTTAACATCAAGAGCCTTGCTGGAAGTGTTGCGACCCTGGCG
genomic: TTGCATTTTCTCTTGGCTTGGGAGCGATTCCGTGGATCATTATGTCTGAGgtatagtttg ... ttcctttcagATCCTTCCTGTTAACATCAAGAGCCTTGCTGGAAGTGTTGCGACCCTGGCG
EST: gi|67016921|gb|CO445670.1|CO445670
EST:     TTGCATTTTCTCTTGGCTTGGGAGCGATTCCGTGGATCATTATGTCTGAG                         ATCCTTCCTGTTAACATCAAGAGCCTTGCTGGAAGTGTTGCGACCCTGGCG
genomic: TTGCATTTTCTCTTGGCTTGGGAGCGATTCCGTGGATCATTATGTCTGAGgtatagtttg ... ttcctttcagATCCTTCCTGTTAACATCAAGAGCCTTGCTGGAAGTGTTGCGACCCTGGCG
EST: gi|71772625|gb|DR970553.1|DR970553
EST:     TTGCATTTTCTCTTGGCTTGGGAGCGATTCCGTGGATCATTATGTCTGAG                         ATCCTTCCTTGT-AACATCAAAAGCCTTGCTGGA
genomic: TTGCATTTTCTCTTGGCTTGGGAGCGATTCCGTGGATCATTATGTCTGAGgtatagtttg ... ttcctttcagATCCTTCCT-GTTAACATCAAGAGCCTTGCTGGA
EST: gi|149077603|gb|EE166303.2|EE166303
EST:     TTGCATTTTCTCTTGGCTTGGGAGCGATTCCGTGGATCATTATGTCTGAG                         ATCCTTCCTGTTAACATCAAGAGCCTTGCTGGAAGTGTTGCGACCCTGGCG
genomic: TTGCATTTTCTCTTGGCTTGGGAGCGATTCCGTGGATCATTATGTCTGAGgtatagtttg ... ttcctttcagATCCTTCCTGTTAACATCAAGAGCCTTGCTGGAAGTGTTGCGACCCTGGCG
EST: gi|6563963|gb|AW231585.1|AW231585
EST:     TTCTCTTGGCTTGGGAGCGATTCCGTGGATCATTATGTCTGAG                         ATCCTTCCTGTTAACATCAAGAGCCTTGCTGGAAGTGTTGCGACCCTGGCG
genomic: TTCTCTTGGCTTGGGAGCGATTCCGTGGATCATTATGTCTGAGgtatagtttg ... ttcctttcagATCCTTCCTGTTAACATCAAGAGCCTTGCTGGAAGTGTTGCGACCCTGGCG
EST: gi|87154157|gb|DY398946.1|DY398946
EST:     TTGCATTTTCTCTTGGCTTGGGAGCGATTCCGTGGATCATTATGTCTGAG                         ATCCTTCCTGTTAACATCAAGAGCCTTGCTGGAAGTGTTGCGACCCTGGCG
genomic: TTGCATTTTCTCTTGGCTTGGGAGCGATTCCGTGGATCATTATGTCTGAGgtatagtttg ... ttcctttcagATCCTTCCTGTTAACATCAAGAGCCTTGCTGGAAGTGTTGCGACCCTGGCG
EST: gi|50325332|gb|CO520458.1|CO520458
EST:     TTGCATTTTCTCTTGGCTTGGGAGCGATTCCGTGGATCATTATGTCTGAG                         ATCCTTCCTGTTAACATCAAGAGCCTTGCTGGAAGTGTTGCGACCCTGGCG
genomic: TTGCATTTTCTCTTGGCTTGGGAGCGATTCCGTGGATCATTATGTCTGAGgtatagtttg ... ttcctttcagATCCTTCCTGTTAACATCAAGAGCCTTGCTGGAAGTGTTGCGACCCTGGCG
EST: gi|26455008|gb|CA826591.1|CA826591
EST:     TTGCATTTTCTCTTGGCTTGGGAGCGATTCCGTGGATCATTATGTCTGAG                         ATCCTTCCTGTTAACATCAAGAGCCTTGCTGGAAGTGTTGCGACCCTGGCG
genomic: TTGCATTTTCTCTTGGCTTGGGAGCGATTCCGTGGATCATTATGTCTGAGgtatagtttg ... ttcctttcagATCCTTCCTGTTAACATCAAGAGCCTTGCTGGAAGTGTTGCGACCCTGGCG
EST: gi|193503551|gb|AM937740.1|AM937740
EST:     TTGCATTTTCTCTTGGCTTGGGAGCGATTCCGTGGATCATTATGTCTGAG                         ATCCTTCCTGTTAACATCAAGAGCCTTGCTGGAAGTGTTGCGACCCTGGCG
genomic: TTGCATTTTCTCTTGGCTTGGGAGCGATTCCGTGGATCATTATGTCTGAGgtatagtttg ... ttcctttcagATCCTTCCTGTTAACATCAAGAGCCTTGCTGGAAGTGTTGCGACCCTGGCG
EST: gi|37374223|gb|CF623456.1|CF623456
EST:     TGNCATTTTCTCTTGGCTTGGGAGCGATTCCGTGGATCATTATGTCTGAG                         ATCCTTCCTGTTAACATCAAGAGCCTTGCTGGAAGTGTTGCGACCCTGGCG
genomic: TG-CATTTTCTCTTGGCTTGGGAGCGATTCCGTGGATCATTATGTCTGAGgtatagtttg ... ttcctttcagATCCTTCCTGTTAACATCAAGAGCCTTGCTGGAAGTGTTGCGACCCTGGCG
EST: gi|83279317|gb|DV943325.1|DV943325
EST:     GGATCATTATGTCTGAG                         ATCCTTCCTGTTAACATCAAGAGCCTTGCTGGAAGTGTTGCGACCCTGGCG
genomic: GGATCATTATGTCTGAGgtatagtttg ... ttcctttcagATCCTTCCTGTTAACATCAAGAGCCTTGCTGGAAGTGTTGCGACCCTGGCG