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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCTGCTTACCCAAGGACTGGCTGGCATCCAGGCCATTGATGTGCCTGGTGTTGAGAACgtaagcatttgtgggtgacaattctcatgtttttagcgaggttccattatttttactgtgcacgatttacag

Basic information

species Zea mays
transcript GRMZM2G092776_T04
intron # 16
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G092776_T03 (Zea mays), 5'ss of exon 16
lower sequence: LOC_Os03g02170.2 (Oryza sativa), 5'ss of exon 14
CCTGCTTACCCAAGGACTGGCTGGCATCCAGGCCATTGATGTGCCTGGTGTTGAGAACgtaagcatttgtgggtgacaattctcatgttttta-gcgaggttccattat-ttttac---------tgtgca---cgatttacag
 ||||| || |||||  ||||||||||||||||||||||||| ||||||||||| || |||||||| || ||||| || ||||  |||| ||| | ||  |||   ||| ||||||         ||| ||   | ||||||||
TCTGCTAACACAAGGGTTGGCTGGCATCCAGGCCATTGATGTCCCTGGTGTTGAAAATgtaagcatctg-gggtgcca-ttcttgtgttcttacgtgattttcatctatcttttacacgtctttgtgtacaatgcaatttacag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110536646|gb|EE040761.1|EE040761
EST:     CCCAAGGACTGGCTGGCATCCAGGCCATTGATGTGCCTGGTGTTGAGAAC                         GTGGATGTTACCGGGCTTGTTGATGGCCATTTTTTGTACCTGTCAGCTGCC
genomic: CCCAAGGACTGGCTGGCATCCAGGCCATTGATGTGCCTGGTGTTGAGAACgtaagcattt ... cgatttacagGTGGATGTTACCGGGCTTGTTGATGGCCATTCTTCGTACCTGTCAGCTGCC
EST: gi|149106666|gb|EE188560.2|EE188560
EST:     CCCAAGGACTGGCTGGCATCCAGGCCATTGATGTGCCTGGTGTTGAGAAC                         GTGGATGTTGCCGGGCTTGTTGATGGCCATTTTTTGTACCTGTCAGCTGCC
genomic: CCCAAGGACTGGCTGGCATCCAGGCCATTGATGTGCCTGGTGTTGAGAACgtaagcattt ... cgatttacagGTGGATGTTACCGGGCTTGTTGATGGCCATTCTTCGTACCTGTCAGCTGCC
EST: gi|6865375|gb|AW360725.1|AW360725
EST:     CCCAAGGACTGGCTGGCATCCAGGCCATTGATGTGCCTGGTGTTGAGAAC                         GTGGATGTTACCGGGCTTGTTGATGGCCATTCTTCGTACCTGTCAGCTGCC
genomic: CCCAAGGACTGGCTGGCATCCAGGCCATTGATGTGCCTGGTGTTGAGAACgtaagcattt ... cgatttacagGTGGATGTTACCGGGCTTGTTGATGGCCATTCTTCGTACCTGTCAGCTGCC
EST: gi|6538838|gb|AW224977.1|AW224977
EST:     CCCAAGGACTGGCTGGCATCCAGGCCATTGATGTGCCTGGTGTTGAGAAC                         GTGGATGTTACCGGGCTTGTTGATGGCCATTCTTCGTACCTGTCAGCTGCC
genomic: CCCAAGGACTGGCTGGCATCCAGGCCATTGATGTGCCTGGTGTTGAGAACgtaagcattt ... cgatttacagGTGGATGTTACCGGGCTTGTTGATGGCCATTCTTCGTACCTGTCAGCTGCC
EST: gi|89252188|gb|DY623974.1|DY623974
EST:     CCCAAGGACTGGCTGGCATCCAGGCCATTGATGTGCCTGGTGTTGAGAAC                         GTGGATGTTACCGGGCTTGTTGATGGCCATTTTTTGTACCTGTCAGCTGCC
genomic: CCCAAGGACTGGCTGGCATCCAGGCCATTGATGTGCCTGGTGTTGAGAACgtaagcattt ... cgatttacagGTGGATGTTACCGGGCTTGTTGATGGCCATTCTTCGTACCTGTCAGCTGCC
EST: gi|74233198|gb|DT641112.1|DT641112
EST:     CCCAAGGACTGGCTGGCATCCAGGCCATTGATGTACCTGGTGTTGAGAAC                         GTGGATGTTACCGAGCTTGTTGATGGTCATTCTTCGTACCTGTCAGCTGCC
genomic: CCCAAGGACTGGCTGGCATCCAGGCCATTGATGTGCCTGGTGTTGAGAACgtaagcattt ... cgatttacagGTGGATGTTACCGGGCTTGTTGATGGCCATTCTTCGTACCTGTCAGCTGCC
EST: gi|6865071|gb|AW360421.1|AW360421
EST:     CCCAAGGACTGGCTGGCATCCAGGCCATTGATGTGCCTGGTGTTGAGAAC                         GTGGATGTTACCGGGCTTGTTGATGGCCATTCTTCGTACCTGTCAGCTGCC
genomic: CCCAAGGACTGGCTGGCATCCAGGCCATTGATGTGCCTGGTGTTGAGAACgtaagcattt ... cgatttacagGTGGATGTTACCGGGCTTGTTGATGGCCATTCTTCGTACCTGTCAGCTGCC
EST: gi|148966542|gb|EE017566.2|EE017566
EST:     CCCAAGGACTGGGTGGCATTCAGGCCATTGATGTGCCTGGTGTTGAGAAC                         GTGGATGTTACCGGGCTTGTTGATGGCCATTTTTTGTTCCTGTCAGCTGCC
genomic: CCCAAGGACTGGCTGGCATCCAGGCCATTGATGTGCCTGGTGTTGAGAACgtaagcattt ... cgatttacagGTGGATGTTACCGGGCTTGTTGATGGCCATTCTTCGTACCTGTCAGCTGCC
EST: gi|91877534|gb|EB407491.1|EB407491
EST:     CCCAAGGACTGGCTGGCATCCAGGCCATTGATGTGCCTGGTGTTGAGAAC                         GTGGATGTTACCGGGCTTGTTGATGGCCATTCTTCGTACCTGTCAGCTGCC
genomic: CCCAAGGACTGGCTGGCATCCAGGCCATTGATGTGCCTGGTGTTGAGAACgtaagcattt ... cgatttacagGTGGATGTTACCGGGCTTGTTGATGGCCATTCTTCGTACCTGTCAGCTGCC
EST: gi|211299421|gb|FL314585.1|FL314585
EST:     CCCAAGGACTGGCTGGCATCCAGGCCATTGATGTACCTGGTGTTGAGAAC                         GTGGATGTTACCGAGCTTGTTGATGGTCATTCTTCGTACCTGTCAGCTGCC
genomic: CCCAAGGACTGGCTGGCATCCAGGCCATTGATGTGCCTGGTGTTGAGAACgtaagcattt ... cgatttacagGTGGATGTTACCGGGCTTGTTGATGGCCATTCTTCGTACCTGTCAGCTGCC
EST: gi|91877535|gb|EB407492.1|EB407492
EST:     CCCAAGGACTGGCTGGCATCCAGGCCATTGATGTGCCTGGTGTTGAGAAC                         GTGGATGTTACCGGG
genomic: CCCAAGGACTGGCTGGCATCCAGGCCATTGATGTGCCTGGTGTTGAGAACgtaagcattt ... cgatttacagGTGGATGTTACCGGG
EST: gi|110960194|gb|EE180246.1|EE180246
EST:     CCCAAGGACTGGCTGGCATCCAGGCCATTGATGTGCCTGGTGTTGAGAAC                         GTGGATGTTACCGGGCTTGTTGATGGCCATTCTTCGTACCTGTCAGCTGCC
genomic: CCCAAGGACTGGCTGGCATCCAGGCCATTGATGTGCCTGGTGTTGAGAACgtaagcattt ... cgatttacagGTGGATGTTACCGGGCTTGTTGATGGCCATTCTTCGTACCTGTCAGCTGCC