1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' |
ACCGGAGAGGGCAAAAGCAGCTGACGAGGCTGTTCCTGAGGGAGGTAGAGCATCTTCTGGAGCTTTCTGCGAAAGAACAGAGCTAAGAGACTCTCATCTGgtacaagattgatttccttctctctgttttccgagtgaaattcctgaggtttctatgttttactagcctgttgtttatctacgatcatgacattgacag
species | Zea mays |
transcript | GRMZM2G078458_T02 |
intron # | 16 |
splice site | 5' |
intron type | U2 |
EST: CATCTTCTGGAGCTTTCTGCGAAAGAACAGAGCTAAGAGACTCTCATCTG GCCCTGCCTGCATCAAGGTTAGAACTGCAGGGTTGTGAAAGGAGGCACACCEST: gi|71330008|gb|DR801741.1|DR801741
genomic: CATCTTCTGGAGCTTTCTGCGAAAGAACAGAGCTAAGAGACTCTCATCTGgtacaagatt ... acattgacagGCCCTGCCTGCATCAAGGTTAGAACTGCAGGGTTGTGAAAGGAGGCACACC
EST: CATCTTCTGGAGCTTTCTGCGAAAGAACAGAGCTAAGAGACTCTCATCTG GCCCTGCCTGCATCAAGGTTAGAACTGCAGGGTTGTGAAAGGAGGCACACCEST: gi|78108130|gb|DV526548.1|DV526548
genomic: CATCTTCTGGAGCTTTCTGCGAAAGAACAGAGCTAAGAGACTCTCATCTGgtacaagatt ... acattgacagGCCCTGCCTGCATCAAGGTTAGAACTGCAGGGTTGTGAAAGGAGGCACACC
EST: CATCTTCTGGAGCTTTCTGCGAAAGAACAGAGCTAAGAGACTCTCATCTG GCCCTGCCTGCATCAAGGTTAGAACTGCAGGGTTGTGAAAGGAGGCACCCCEST: gi|71298468|gb|DR785212.1|DR785212
genomic: CATCTTCTGGAGCTTTCTGCGAAAGAACAGAGCTAAGAGACTCTCATCTGgtacaagatt ... acattgacagGCCCTGCCTGCATCAAGGTTAGAACTGCAGGGTTGTGAAAGGAGGCACACC
EST: CATCTTTTGGAGCTTTTTGCGAAAGAACAGAGCTAAGAGACTCTCATCTG GCCCTGCCTGCATCAAGGTTAGAACTGCAGGGTTGTGAAAGGAGGCACACCEST: gi|60396915|gb|DN229734.1|DN229734
genomic: CATCTTCTGGAGCTTTCTGCGAAAGAACAGAGCTAAGAGACTCTCATCTGgtacaagatt ... acattgacagGCCCTGCCTGCATCAAGGTTAGAACTGCAGGGTTGTGAAAGGAGGCACACC
EST: CATCTTCTGGAGCTTTCTGCGAAAGAACAGAGCTAAGAGACTCTCATCTG GCCCTGCCTGCATCAAGGTTAGAACTGCAGGGTTGTGAAAGGAGGCACACCEST: gi|86469372|gb|DY235742.1|DY235742
genomic: CATCTTCTGGAGCTTTCTGCGAAAGAACAGAGCTAAGAGACTCTCATCTGgtacaagatt ... acattgacagGCCCTGCCTGCATCAAGGTTAGAACTGCAGGGTTGTGAAAGGAGGCACACC
EST: CATCTTCTGGAGCTTTCTGCGAAAGAACAGAGCTAAGAGACTCTCATCTG GCCCTGCCTGCATCAAGGTTAGAACTGCAGGGTTGTGAAAGGAGGCACACCEST: gi|78122645|gb|DV541029.1|DV541029
genomic: CATCTTCTGGAGCTTTCTGCGAAAGAACAGAGCTAAGAGACTCTCATCTGgtacaagatt ... acattgacagGCCCTGCCTGCATCAAGGTTAGAACTGCAGGGTTGTGAAAGGAGGCACACC
EST: CATCTTCTGGAGCTTTCTGCGAAAGAACAGAGCTAAGAGACTCTCATCTG GCCCTGCCTGCATCAAGGTTAGAACTGCAGGGTTGTGAAAGGAGGCACACC
genomic: CATCTTCTGGAGCTTTCTGCGAAAGAACAGAGCTAAGAGACTCTCATCTGgtacaagatt ... acattgacagGCCCTGCCTGCATCAAGGTTAGAACTGCAGGGTTGTGAAAGGAGGCACACC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ACCGGAGAGGGCAAAAGCAGCTGACGAGGCTGTTCCTGAGGGAGGTAGAGCATCTTCTGGAGCTTTCTGCGAAAGAACAGAGCTAAGAGACTCTCATCTGgtacaagattgatttccttctctctgttttccgagtgaaattcctgaggtttctatgttttactagcctgttgtttatctacgatcatgacattgacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA