1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' |
GTTTACACCAATCTCAAAGGCAACCGAGCTCATGCAGCGAACACTGGTTGGGCCATGCTGGCGCTGATTGATGCAGGACAGgtctgtcatttgaccttgtagctttggatactatactaaactctgatacgatgcgcacgtgttcgttatgggtacttaaatcgcgcgtccgtgcag
species | Zea mays |
transcript | GRMZM2G065494_T01 |
intron # | 16 |
splice site | 5' |
intron type | U2 |
EST: ATGCAGCGAACACTGGTTGGGCCATGCTGGCGCTGATTGATGCAGGACAG GCCCAGAGAGATCCCGCGCCTCTACACCGAGCAGCAAAGGTTTTGATCAACEST: gi|488246|gb|T18827.1|T18827
genomic: ATGCAGCGAACACTGGTTGGGCCATGCTGGCGCTGATTGATGCAGGACAGgtctgtcatt ... gtccgtgcagGCCCAGAGAGATCCCGCGCCTCTACACCGAGCAGCAAAGGTTTTGATCAAC
EST: GCCATGCTGGCGCTGATTGATGCAGGACAG GCCCAGAGAGATCCCGCGCCTCTACACCGAGCAGCAAAGGTTTTGATCAACEST: gi|32838148|gb|CD977826.1|CD977826
genomic: GCCATGCTGGCGCTGATTGATGCAGGACAGgtctgtcatt ... gtccgtgcagGCCCAGAGAGATCCCGCGCCTCTACACCGAGCAGCAAAGGTTTTGATCAAC
EST: ATGCAGCGAACACTGGTTGGGCCATGCTGGCGCTGATTGATGCAGGACAG GCCCAGAGAGATCCCGCGCCTCTACACCGAGCAGCAAGGGTTTTGATAAACEST: gi|17352566|gb|BM173680.1|BM173680
genomic: ATGCAGCGAACACTGGTTGGGCCATGCTGGCGCTGATTGATGCAGGACAGgtctgtcatt ... gtccgtgcagGCCCAGAGAGATCCCGCGCCTCTACACCGAGCAGCAAAGGTTTTGATCAAC
EST: ATGCAGCGAACACTGGTTGGGCCATGCTGGCGCTGATTGATGCAGGACAG GCCCAGAGAGATCCCGCGCCTCTAC-CCGAGCAGCAAGGGTTTTGATAAACEST: gi|32839382|gb|CD979063.1|CD979063
genomic: ATGCAGCGAACACTGGTTGGGCCATGCTGGCGCTGATTGATGCAGGACAGgtctgtcatt ... gtccgtgcagGCCCAGAGAGATCCCGCGCCTCTACACCGAGCAGCAAAGGTTTTGATCAAC
EST: ATGCAGCGAACACTGGTTGGGCCATGCTGGCGCTGATTGATGCAGGACAG GCCCAGAGAGATCCCGCGCCTCTACACCGAGCAGCAAGGGTTTTGATAAACEST: gi|31357306|gb|CD441663.1|CD441663
genomic: ATGCAGCGAACACTGGTTGGGCCATGCTGGCGCTGATTGATGCAGGACAGgtctgtcatt ... gtccgtgcagGCCCAGAGAGATCCCGCGCCTCTACACCGAGCAGCAAAGGTTTTGATCAAC
EST: ATGCAGCGAACACTGGTTGGGCCATGCTGGCGCTGATTGATGCAGGACAG GCCCAGAGAGATCCCGCGCCTCTACACCGAGCAGCAAAGGTTTTGATCAACEST: gi|18179995|gb|BM381205.1|BM381205
genomic: ATGCAGCGAACACTGGTTGGGCCATGCTGGCGCTGATTGATGCAGGACAGgtctgtcatt ... gtccgtgcagGCCCAGAGAGATCCCGCGCCTCTACACCGAGCAGCAAAGGTTTTGATCAAC
EST: ATGCAGCGAACACTGGTTGGGCCATGCTGGCGCTGATTGATGCAGGACAG GCCCAGAGAGATCCCGCGCCTCTACACCGAGCAGCAAAGGTTTTGATCAACEST: gi|31357419|gb|CD441776.1|CD441776
genomic: ATGCAGCGAACACTGGTTGGGCCATGCTGGCGCTGATTGATGCAGGACAGgtctgtcatt ... gtccgtgcagGCCCAGAGAGATCCCGCGCCTCTACACCGAGCAGCAAAGGTTTTGATCAAC
EST: ATGCAGCGAACACTGGTTGGGCCATGCTGGCGCTGATTGATGCAGGACAG GCCCAGAGAGATCCCGCGCCTCTACACCGAGCAGCAAAGGTTTTGATCAACEST: gi|33094833|gb|CF054827.1|CF054827
genomic: ATGCAGCGAACACTGGTTGGGCCATGCTGGCGCTGATTGATGCAGGACAGgtctgtcatt ... gtccgtgcagGCCCAGAGAGATCCCGCGCCTCTACACCGAGCAGCAAAGGTTTTGATCAAC
EST: ATGCAGCGAACACTGGTTGGGCCATGCTGGCGCTGATTGATGCAGGACAG GCCCAGAGAGATCCCGCGCCTCTACACCGAGCAGCAAGGGTTTTGATAAACEST: gi|149084840|gb|EE174345.2|EE174345
genomic: ATGCAGCGAACACTGGTTGGGCCATGCTGGCGCTGATTGATGCAGGACAGgtctgtcatt ... gtccgtgcagGCCCAGAGAGATCCCGCGCCTCTACACCGAGCAGCAAAGGTTTTGATCAAC
EST: ATGCAGCGAACACTGGTTGGGCCATGCTGGCGCTGATTGATGCAGGACAG GCCCAGAGAGATCCCGCGCCTCTACACCGAGCAGCAAAGGTTTTGATCAACEST: gi|211125929|gb|FL443336.1|FL443336
genomic: ATGCAGCGAACACTGGTTGGGCCATGCTGGCGCTGATTGATGCAGGACAGgtctgtcatt ... gtccgtgcagGCCCAGAGAGATCCCGCGCCTCTACACCGAGCAGCAAAGGTTTTGATCAAC
EST: ATGCAGCGAACACTGGTTGGGCCATGCTGGCGCTGATTGATGCAGGACAG GCCCAGAGAGATCCCGCGCCTCTACACCGAGCAGCAAAGGTTTTGATCAACEST: gi|12967988|gb|BG264935.1|BG264935
genomic: ATGCAGCGAACACTGGTTGGGCCATGCTGGCGCTGATTGATGCAGGACAGgtctgtcatt ... gtccgtgcagGCCCAGAGAGATCCCGCGCCTCTACACCGAGCAGCAAAGGTTTTGATCAAC
EST: ATGCAGCGAACACTGGTTGGGCCATGCTGGCGCTGATTGATGCAGGACAG GCCCAGAGAGATCCCGCGCCTCTACACCGAGCAGCAAAGGTTTTGATCAAC
genomic: ATGCAGCGAACACTGGTTGGGCCATGCTGGCGCTGATTGATGCAGGACAGgtctgtcatt ... gtccgtgcagGCCCAGAGAGATCCCGCGCCTCTACACCGAGCAGCAAAGGTTTTGATCAAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTTTACACCAATCTCAAAGGCAACCGAGCTCATGCAGCGAACACTGGTTGGGCCATGCTGGCGCTGATTGATGCAGGACAGgtctgtcatttgaccttgtagctttggatactatactaaactctgatacgatgcgcacgtgttcgttatgggtacttaaatcgcgcgtccgtgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT