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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTGTCCAAGTTATATGAGGTCGTGCCTCCGATCCTCACTGAGCTGGGAAAGgtaatgtggtaccacattgatcacgagttttcactcatttggtttcagcttagacctctcgtattcacctcaatccatgtgtattgaggtggattggagt...

Basic information

species Zea mays
transcript GRMZM2G063909_T01
intron # 16
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G063909_T01 (Zea mays), 5'ss of exon 16
lower sequence: LOC_Os11g33240.2 (Oryza sativa), 5'ss of exon 17
CTGTCCAAGTTATATGAGGTCGTGCCTCCGATCCTCACTGAGCTGGGAAAGgtaatgtggtaccacattgatcacgagttttcactcatttggtttcagcttagacctctcgtattcacctcaatccatgtgtattgaggtggattggagt
 | |||||||| ||||| || |||||||| |||||||||||||| || |||||||||    || | |||||||| || ||   ||   |||   | || ||||          | | ||  || |     | | |  ||            
GTCTCCAAGTTGTATGAAGTTGTGCCTCCAATCCTCACTGAGCTTGGCAAGgtaatgc--cactagattgatcatga-ttgctaccgttttatgtccatcttattggctaaaaagtgacaacattgtccatatttccag------------

upper sequence: GRMZM2G063909_T01 (Zea mays), 5'ss of exon 16
lower sequence: LOC_Os02g10070.1 (Oryza sativa), 5'ss of exon 17
CTGTCCAAGTTATATGAGGTCGTGCCTCCGATCCTCACTGAGCTGGGAAAGgtaatgtggtaccacattgatcacgagttttcactcatttggtttcagcttagacctctcgtattcacctcaatccatgtgtattgaggtggattggagt--------
 | |||||||| ||||| || |||||||| |||||||||||||| || |||||||||   ||| | ||||||||  | || |  ||| |||  || | |||    |   |    | || |||| |   |  | | | ||                    
GTCTCCAAGTTGTATGAAGTTGTGCCTCCTATCCTCACTGAGCTTGGCAAGgtaatgc--tactagattgatcaataattattgctcctttaattacggctccttcagtttacttccatctcattggctaagaaataagaacatccttcacattttcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211314255|gb|FK994155.1|FK994155
EST:     TGTCCAAGTTATATGAGGTCGTGCCTCCGATCCTCACTGAGCTGGGAAAG                         GTCAAGAACCCATGGCCCAATGTTGACGCTCACAGTGGACTCTTGCTGAAC
genomic: TGTCCAAGTTATATGAGGTCGTGCCTCCGATCCTCACTGAGCTGGGAAAGgtaatgtggt ... gttttctcagGTCAAGAACCCATGGCCCAATGTTGACGCTCACAGTGGACTCTTGCTGAAC
EST: gi|60357508|gb|DN224481.1|DN224481
EST:     TGTCCAAGTTATATGAGGTCGTGCCTCCGATCCTCACTGAGCTGGGAAAG                         GTCAAGAACCCATGGCCCAATGTTGACGCTCACAGTGGACTCTTGCTGAAC
genomic: TGTCCAAGTTATATGAGGTCGTGCCTCCGATCCTCACTGAGCTGGGAAAGgtaatgtggt ... gttttctcagGTCAAGAACCCATGGCCCAATGTTGACGCTCACAGTGGACTCTTGCTGAAC
EST: gi|78076903|gb|DV505337.1|DV505337
EST:     TGTCCAAGTTATATGAGGTCGTGCCTCCGATCCTCACTGAGCTGGGAAAG                         GTCAAGAACCCATGGCCCAATGTTGACGCTCACAGTGGACTCTTGCTGAAC
genomic: TGTCCAAGTTATATGAGGTCGTGCCTCCGATCCTCACTGAGCTGGGAAAGgtaatgtggt ... gttttctcagGTCAAGAACCCATGGCCCAATGTTGACGCTCACAGTGGACTCTTGCTGAAC
EST: gi|211458206|gb|FL358448.1|FL358448
EST:     TGTCCAAGTTATATGAGGTCGTGCCTCCGATCCTCACTGAGCTGGGAAAG                         GTCAAGAACCCATGGCCCAATGTTGACGCTCACAGTGGACTCTTGCTGAAC
genomic: TGTCCAAGTTATATGAGGTCGTGCCTCCGATCCTCACTGAGCTGGGAAAGgtaatgtggt ... gttttctcagGTCAAGAACCCATGGCCCAATGTTGACGCTCACAGTGGACTCTTGCTGAAC
EST: gi|60345083|gb|DN212056.1|DN212056
EST:     TGTCCAAGTTATATGAGGTCGTGCCTCCGATCCTCACTGAGCTGGGAAAG                         GTCAAGAACCCATGGCCCAATGTTGACGCTCACAGTGGACTCTTGCTGAAC
genomic: TGTCCAAGTTATATGAGGTCGTGCCTCCGATCCTCACTGAGCTGGGAAAGgtaatgtggt ... gttttctcagGTCAAGAACCCATGGCCCAATGTTGACGCTCACAGTGGACTCTTGCTGAAC
EST: gi|50331232|gb|CO526358.1|CO526358
EST:     TGTCCAAGTTATATGAGGTCGTGCCTCCGATCCTCACTGAGCTGGGAAAG                         GTCAAGAACCCATGGCCCAATGTTGACGCTCACAGTGGACTCTTGCTGAAC
genomic: TGTCCAAGTTATATGAGGTCGTGCCTCCGATCCTCACTGAGCTGGGAAAGgtaatgtggt ... gttttctcagGTCAAGAACCCATGGCCCAATGTTGACGCTCACAGTGGACTCTTGCTGAAC
EST: gi|40334210|gb|CK368280.1|CK368280
EST:     TGTCCAAGTTATATGAGGTCGTGCCTCCGATCCTCACTGAGCTGGGAAAG                         GTCAAGAACCCATGGCCCAATGTTGACGCTCACAGTGGACTCTTGCTGAAC
genomic: TGTCCAAGTTATATGAGGTCGTGCCTCCGATCCTCACTGAGCTGGGAAAGgtaatgtggt ... gttttctcagGTCAAGAACCCATGGCCCAATGTTGACGCTCACAGTGGACTCTTGCTGAAC
EST: gi|60400601|gb|DN233408.1|DN233408
EST:     TGTCCAAGTTATATGAGGTCGTGCCTCCGATCCTCACTGAGCTGGGAAAG                         GTCAAGAACCCATGGCCCAATGTTGACGCTCACAGTGGACTCTTGCTGAAC
genomic: TGTCCAAGTTATATGAGGTCGTGCCTCCGATCCTCACTGAGCTGGGAAAGgtaatgtggt ... gttttctcagGTCAAGAACCCATGGCCCAATGTTGACGCTCACAGTGGACTCTTGCTGAAC
EST: gi|60354991|gb|DN221964.1|DN221964
EST:     TGTCCAAGTTATATGAGGTCGTGCCTCCGATCCTCACTGAGCTGGGAAAG                         GTCAAGAACCCATGGCCCAATGTTGACGCTCACAGTGGACTCTTGCTGAAC
genomic: TGTCCAAGTTATATGAGGTCGTGCCTCCGATCCTCACTGAGCTGGGAAAGgtaatgtggt ... gttttctcagGTCAAGAACCCATGGCCCAATGTTGACGCTCACAGTGGACTCTTGCTGAAC