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GAATAATGAGGAGCGAAGTTCTGACATGCGAGACCTGAGGACTTCTTTCTCTGCACTTGAAGAGAAAGTCCTGGACCAATATACTTTTGCAAAGgtatgatgcacaattcaggacatagtgttgattaactactgaatgcatgatttagcaaaattgattgtcatatatattataaccccagtatctttctttc...
species | Zea mays |
transcript | GRMZM2G050647_T01 |
intron # | 16 |
splice site | 5' |
intron type | U2 |
EST: CTTTCTCTGCACTTGAAGAGAAAGTCCTGGACCAATATACTTTTGCAAAG TCAAACTTGATCAGAAGTGCTGCACAAAGTTATCTTTTGGATTCTGGGATTEST: gi|213191976|gb|FM194178.1|FM194178
genomic: CTTTCTCTGCACTTGAAGAGAAAGTCCTGGACCAATATACTTTTGCAAAGgtatgatgca ... gtttgattagTCAAACTTGATCAGAAGTGCTGCACAAAGTTATCTTTTGGATTCTGGGATT
EST: CTTTCTCTGCACTTGAAGAGAAAGTCCTGGACCAATATACTTTTGCAAAG TCAAACTTGATCAGAAGTGCTGCACAAAGTTATCTTTTGGATTCTGGGATTEST: gi|32847373|gb|CD987054.1|CD987054
genomic: CTTTCTCTGCACTTGAAGAGAAAGTCCTGGACCAATATACTTTTGCAAAGgtatgatgca ... gtttgattagTCAAACTTGATCAGAAGTGCTGCACAAAGTTATCTTTTGGATTCTGGGATT
EST: CTTTCTCTGCACTTGAAGAGAAAGTCCTGGACCAATATACTTTTGCAAAG TCAAACTTGATCAGAAGTGCTGCACAAAGTTATCTTTTGGATTCTGGGATT
genomic: CTTTCTCTGCACTTGAAGAGAAAGTCCTGGACCAATATACTTTTGCAAAGgtatgatgca ... gtttgattagTCAAACTTGATCAGAAGTGCTGCACAAAGTTATCTTTTGGATTCTGGGATT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAATAATGAGGAGCGAAGTTCTGACATGCGAGACCTGAGGACTTCTTTCTCTGCACTTGAAGAGAAAGTCCTGGACCAATATACTTTTGCAAAGgtatgatgcacaattcaggacatagtgttgattaactactgaatgcatgatttagcaaaattgattgtcatatatattataaccccagtatctttctttc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG