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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATATGGAAGGCAGACATTGCCTGGACTAATTAAAGATGGAATGAGTGCTCTTTCAAGATATTATTTGAATAATTTTCATGACGGAGTGCGGCAAgtaagttcttatgttatgctcattgctctagtcctattagcgatcgctcctcttaggcatttttcttgtacaaccttcacttcagtttccagagcactta...

Basic information

species Zea mays
transcript GRMZM2G047894_T03
intron # 16
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G047894_T02 (Zea mays), 5'ss of exon 17
lower sequence: LOC_Os03g18080.2 (Oryza sativa), 5'ss of exon 17
ATATGGAAGGCAGACATTGCCTGGACTAATTAAAGATGGAATGAGTGCTCTTTCAAGATATTATTTGAATAATTTTCATGACGGAGTGCGGCAAgtaagttcttatgttatgctcattgctctagtcctattagcgatcgctcctcttaggcatttttcttgtacaaccttcactt--cagtttccagagcactta--
 ||||||||||||||||| |||||| | ||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||| | |||||||||  | ||    |||   ||    ||  | || ||   || ||| | || |    ||  ||||||  || | |   ||  ||||        |  | |  
GTATGGAAGGCAGACATTACCTGGATTGATTAAAGATGGCATGAGTGCTCTTTCACGATATTATTTGAATAATTTTCATGACGGAGTGAGACAAgtaagtgat-atccactgccagttctgatatacatagtaa--attgcttccctaatat-ttggtcttgtcaaatcatattttatcagtgaatgatcctttcagg

upper sequence: GRMZM2G047894_T02 (Zea mays), 5'ss of exon 17
lower sequence: Vv08s0105g00480.t01 (Vitis vinifera), 5'ss of exon 17
ATATGGAAGGCAGACATTGCCTGGACTAATTAAAGATGGAATGAGTGCTCTTTCAAGATATTATTTGAATAATTTTCATGACGGAGTGCGGCAAgtaagttcttatgttatgct-cattgctctagtcctatt---------agcgatcgctcctcttaggcatttttcttgta-caaccttcacttcagtttccagagcactta-
|||||| |  |||||  || | ||||| ||||||||||| ||||||||| | |||||||||||||| || ||||| || || ||  | || || | ||| | |    | ||  | | ||||| |  |    ||         |  ||  |     |  ||  |  ||| |  || | |  | |   | | ||||  |     | | 
ATATGGCAAACAGACTATGTCAGGACTCATTAAAGATGGGATGAGTGCTATATCAAGATATTATTTAAACAATTTCCAAGATGGGATTCGACAGgcaagctgtctaataatatttctttgctattatttacttgcaaatttgaatgaaagtgaaccagagtgaaatttgtgctaacgaattgcttgtaaatttcatggtttttcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|31348859|gb|CD433216.1|CD433216
EST:     GTGCTCTTTCAAGATATTATTTGAATAATTTTCATGACGGAGTGCGGCAA                         GATGCTCTTGACCTTATTAGCGGTTATTATACAGTCAGCCAAGGCAGCTCT
genomic: GTGCTCTTTCAAGATATTATTTGAATAATTTTCATGACGGAGTGCGGCAAgtaagttctt ... ttgtctccagGATGCTCTTGACCTTATTAGCGGTTATTATACAGTCAGCCAAGGCAGCTCT
EST: gi|78021557|gb|DV489944.1|DV489944
EST:     GTGCTCTTTCAAGATATTATTTGAATAATTTTCATGACGGAGTGCGGCAA                         GATGCTCTTGACCTTATTAGCGGTTATTATACAGTCAGCCAAGGCAGCTCT
genomic: GTGCTCTTTCAAGATATTATTTGAATAATTTTCATGACGGAGTGCGGCAAgtaagttctt ... ttgtctccagGATGCTCTTGACCTTATTAGCGGTTATTATACAGTCAGCCAAGGCAGCTCT
EST: gi|71428422|gb|DR809472.1|DR809472
EST:     GTGCTCTTTCAAGATATTATTTGAATAATTTTCATGACGGAGTGCGGCAA                         GATGCTCTTGACCTTATTAGCGGTTATTATACAGTCAGCCAAGGCAGCTCT
genomic: GTGCTCTTTCAAGATATTATTTGAATAATTTTCATGACGGAGTGCGGCAAgtaagttctt ... ttgtctccagGATGCTCTTGACCTTATTAGCGGTTATTATACAGTCAGCCAAGGCAGCTCT
EST: gi|78022411|gb|DV490798.1|DV490798
EST:     GTGCTCTTTCAAGATATTATTTGAATAATTTTCATGACGGAGTGCGGCAA                         GATGCTCTTGACCTTATTAGCGGTTATTATACAGTCAGCCAAGGCAGCTCT
genomic: GTGCTCTTTCAAGATATTATTTGAATAATTTTCATGACGGAGTGCGGCAAgtaagttctt ... ttgtctccagGATGCTCTTGACCTTATTAGCGGTTATTATACAGTCAGCCAAGGCAGCTCT
EST: gi|32934739|gb|CF039551.1|CF039551
EST:     GTGCTCTTTCAAGATATTATTTGAATAATTTTCATGACGGAGTGCGGCAA                         GATGCTCTTGACCTTATTAGCGGTTATTATACAGTCAGCCAAGGCAGCTCT
genomic: GTGCTCTTTCAAGATATTATTTGAATAATTTTCATGACGGAGTGCGGCAAgtaagttctt ... ttgtctccagGATGCTCTTGACCTTATTAGCGGTTATTATACAGTCAGCCAAGGCAGCTCT
EST: gi|37387638|gb|CF631017.1|CF631017
EST:     GTGCTCTTTCAAGATATTATTTGAATAATTTTCATGACGGAGTGCGGCAA                         GATGCTCTTGACCTTATTAGCGGTTATTATACAGTCAGCCAAGGCAGCTCT
genomic: GTGCTCTTTCAAGATATTATTTGAATAATTTTCATGACGGAGTGCGGCAAgtaagttctt ... ttgtctccagGATGCTCTTGACCTTATTAGCGGTTATTATACAGTCAGCCAAGGCAGCTCT
EST: gi|37391643|gb|CF633065.1|CF633065
EST:     CGGAGTGCGGCAA                         GATGCTCTTGACCTTATTAGCGGTTATTATACAGTCAGCCAAGGCAGCTCT
genomic: CGGAGTGCGGCAAgtaagttctt ... ttgtctccagGATGCTCTTGACCTTATTAGCGGTTATTATACAGTCAGCCAAGGCAGCTCT
EST: gi|71325384|gb|DR799369.1|DR799369
EST:     GTGCTCTTTCAAGATATTATTTGAATAATTTTCATGACGGAGTGCGGCAA                         GATGCTCTTGACCTTATTAGCGGTTATTATACAGTCAGCCAAGGCAGCTCT
genomic: GTGCTCTTTCAAGATATTATTTGAATAATTTTCATGACGGAGTGCGGCAAgtaagttctt ... ttgtctccagGATGCTCTTGACCTTATTAGCGGTTATTATACAGTCAGCCAAGGCAGCTCT
EST: gi|18385140|gb|BM418339.1|BM418339
EST:     GTGCTCTTTCAAGATATTATTTGAATAATTTTCATGACGGAGTGCGGCAA                         GATGCTCTTGACCTTATTAGCGGTTATTATACAGTCAGCCAAGGCAGCTCT
genomic: GTGCTCTTTCAAGATATTATTTGAATAATTTTCATGACGGAGTGCGGCAAgtaagttctt ... ttgtctccagGATGCTCTTGACCTTATTAGCGGTTATTATACAGTCAGCCAAGGCAGCTCT
EST: gi|17970259|gb|BM277022.1|BM277022
EST:     GTGCTCTTTCAAGATATTATTTGAATAATTTTCATGACGGAGTGCGGCAA                         GATGCTCTTGACCTTATTAGCGGTTATTATACAGTCAGCCAAGGCAGCTCT
genomic: GTGCTCTTTCAAGATATTATTTGAATAATTTTCATGACGGAGTGCGGCAAgtaagttctt ... ttgtctccagGATGCTCTTGACCTTATTAGCGGTTATTATACAGTCAGCCAAGGCAGCTCT
EST: gi|24763373|gb|CA398549.1|CA398549
EST:     GTGCTCTTTCAAGATATTATTTGAATAATTTTCATGACGGAGTGCGGCAA                         GATGCTCTTGCCCTTATTAGCGGTTATTATACAGTCAGCCAAGGCAGCTCT
genomic: GTGCTCTTTCAAGATATTATTTGAATAATTTTCATGACGGAGTGCGGCAAgtaagttctt ... ttgtctccagGATGCTCTTGACCTTATTAGCGGTTATTATACAGTCAGCCAAGGCAGCTCT
EST: gi|12968368|gb|BG265314.1|BG265314
EST:     GTGCTCTTTCAAGATATTATTTGAATAATTTTCATGACGGAGTGCGGCAA                         GATGCTCTTGACCTTATTAGCGGTTATTATACAGTCAGCCAAGGCAGCTCT
genomic: GTGCTCTTTCAAGATATTATTTGAATAATTTTCATGACGGAGTGCGGCAAgtaagttctt ... ttgtctccagGATGCTCTTGACCTTATTAGCGGTTATTATACAGTCAGCCAAGGCAGCTCT
EST: gi|5296286|gb|AI783056.1|AI783056
EST:     GTGCTCTTTCAAGATATTATTTGAATAATTTTCATGACGGAGTGCGGCAA                         GATGCTCTTGACCTTATTAGCGGTTATTATACAGTCAGCCAAGGCAGCTCT
genomic: GTGCTCTTTCAAGATATTATTTGAATAATTTTCATGACGGAGTGCGGCAAgtaagttctt ... ttgtctccagGATGCTCTTGACCTTATTAGCGGTTATTATACAGTCAGCCAAGGCAGCTCT
EST: gi|113702249|gb|EE679753.1|EE679753
EST:     GTGCTCTTTCAAGATATTATTTGAATAATTTTCATGACGGAGTGCGGCAA                         GATGCTCTTGACCTTATTAGCGGTTATTATACAGTCAGCCAAGGCAGCTCT
genomic: GTGCTCTTTCAAGATATTATTTGAATAATTTTCATGACGGAGTGCGGCAAgtaagttctt ... ttgtctccagGATGCTCTTGACCTTATTAGCGGTTATTATACAGTCAGCCAAGGCAGCTCT
EST: gi|32850672|gb|CD990353.1|CD990353
EST:     GTGCTCTTTCAAGATATTATTTGAATAATTTTCATGACGGAGTGCGGCAA                         GATGCTCTTGACCTTATTAGCGGTTATTATACAGTCAGCCAAGGCAGCTCT
genomic: GTGCTCTTTCAAGATATTATTTGAATAATTTTCATGACGGAGTGCGGCAAgtaagttctt ... ttgtctccagGATGCTCTTGACCTTATTAGCGGTTATTATACAGTCAGCCAAGGCAGCTCT