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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGGTTTGCTCTTGGAGGGAAACAGAGTTATACAAATAAAAACACTCCTCAGGATATTATTACTAGAGAGCCTCACTTGTATGCATTCTCATTCAAGAACGgtcagttgctgtagattttgtacatactttcatgcagttgtatatccgtatgaaatttctgtttcctttcattcatttttgggatatctttattatacaactttctgatctaattgtcattttattgtttggttttgtttatgctacgattattgtcattaaccag

Basic information

species Zea mays
transcript GRMZM2G047310_T02
intron # 16
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71439549|gb|DR820599.1|DR820599
EST:     GGATATTATTACTAGAGAGCCTCACTTGTATGCATTCTCATTCAAGAACG                         GGAGACTGGAG
genomic: GGATATTATTACTAGAGAGCCTCACTTGTATGCATTCTCATTCAAGAACGgtcagttgct ... cattaaccagGGAGACTGGAG
EST: gi|211106295|gb|FL022813.1|FL022813
EST:     GGATATTATTACTAGAGAGCCTCACTTGNATGCATTCTCATTCAAGAACG                         GGAGACTGGAGGTTAC
genomic: GGATATTATTACTAGAGAGCCTCACTTGTATGCATTCTCATTCAAGAACGgtcagttgct ... cattaaccagGGAGACTGGAGGTTAC
EST: gi|101399213|gb|EB821480.1|EB821480
EST:     GGATATTATTACTAGAGAGCCTCACTTGTATGCATTCTCATTCAAGAACG                         GGAGACTGGAG
genomic: GGATATTATTACTAGAGAGCCTCACTTGTATGCATTCTCATTCAAGAACGgtcagttgct ... cattaaccagGGAGACTGGAG
EST: gi|211541601|gb|FL022804.1|FL022804
EST:     GGATATTATTACTAGAGAGCCTCACTTGTATGCATTCTCATTCAAGAACG                         GGAGACTGGAGGTTA
genomic: GGATATTATTACTAGAGAGCCTCACTTGTATGCATTCTCATTCAAGAACGgtcagttgct ... cattaaccagGGAGACTGGAGGTTA
EST: gi|211106291|gb|FL022809.1|FL022809
EST:     GGATATTATTACTAGAGAGCCTCACTTGTATGCATTCTCATTCAAGAACG                         GGAGACTGGAG
genomic: GGATATTATTACTAGAGAGCCTCACTTGTATGCATTCTCATTCAAGAACGgtcagttgct ... cattaaccagGGAGACTGGAG
EST: gi|211106290|gb|FL022808.1|FL022808
EST:     GGATATTATTACTANAGAGNCTCNCTTGTATGCATTCTCATTCAANAACG                         GGAGACTGGAG
genomic: GGATATTATTACTAGAGAGCCTCACTTGTATGCATTCTCATTCAAGAACGgtcagttgct ... cattaaccagGGAGACTGGAG
EST: gi|211106292|gb|FL022810.1|FL022810
EST:     GGATATTATTACTAGAGAGCCTCACTTGTATGCATTCTCATTCAAGAACG                         GGAGACTGGAG
genomic: GGATATTATTACTAGAGAGCCTCACTTGTATGCATTCTCATTCAAGAACGgtcagttgct ... cattaaccagGGAGACTGGAG
EST: gi|211541598|gb|FL022801.1|FL022801
EST:     GGATATTATTACTAGAGAGCCTCACTTGTATGCATTCTCATTCAAGAACG                         GGAGACTGGAG
genomic: GGATATTATTACTAGAGAGCCTCACTTGTATGCATTCTCATTCAAGAACGgtcagttgct ... cattaaccagGGAGACTGGAG
EST: gi|211106297|gb|FL022815.1|FL022815
EST:     GGATATTATTACTAGAGAGCCTCACTTGTATGCATTCTCATTCAAGAACG                         GGAGACTGGAG
genomic: GGATATTATTACTAGAGAGCCTCACTTGTATGCATTCTCATTCAAGAACGgtcagttgct ... cattaaccagGGAGACTGGAG
EST: gi|5816386|gb|AI987302.1|AI987302
EST:     GGATATTATTACTAGAGAGCCTCACTTGTATGCATTCTCATTCAAGAACG                         GGAGACTGGAG
genomic: GGATATTATTACTAGAGAGCCTCACTTGTATGCATTCTCATTCAAGAACGgtcagttgct ... cattaaccagGGAGACTGGAG
EST: gi|13562200|gb|BG550420.1|BG550420
EST:     GGATATTATTACTAGAGAGCCTCACTTGTATGCATTCTCATTCAAGAACG                         GGAGACTGGAG
genomic: GGATATTATTACTAGAGAGCCTCACTTGTATGCATTCTCATTCAAGAACGgtcagttgct ... cattaaccagGGAGACTGGAG
EST: gi|93281335|gb|EB673599.1|EB673599
EST:     CTTGTATGCATTCTCATTCAAGAACG                         GGAGACTGGAG
genomic: CTTGTATGCATTCTCATTCAAGAACGgtcagttgct ... cattaaccagGGAGACTGGAG
EST: gi|211106298|gb|FL022816.1|FL022816
EST:     GGATATTATTACTAGAGAGCCTCACTTGTATGCATTCTCATTCAAGAACG                         GGAGACTGGAG
genomic: GGATATTATTACTAGAGAGCCTCACTTGTATGCATTCTCATTCAAGAACGgtcagttgct ... cattaaccagGGAGACTGGAG
EST: gi|211106296|gb|FL022814.1|FL022814
EST:     GGATATTATTACTAGAGAGCCTCACTTGTATGCATTCTCATTCAAGAACG                         GGAGACTGGAG
genomic: GGATATTATTACTAGAGAGCCTCACTTGTATGCATTCTCATTCAAGAACGgtcagttgct ... cattaaccagGGAGACTGGAG
EST: gi|211541599|gb|FL022802.1|FL022802
EST:     GGATATTATTACTAGAGAGCCTCACTTGTATGCATTCTCATTCAAGAACG                         GGAGACTGGAG
genomic: GGATATTATTACTAGAGAGCCTCACTTGTATGCATTCTCATTCAAGAACGgtcagttgct ... cattaaccagGGAGACTGGAG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TGGTTTGCTCTTGGAGGGAAACAGAGTTATACAAATAAAAACACTCCTCAGGATATTATTACTAGAGAGCCTCACTTGTATGCATTCTCATTCAAGAACGgtcagttgctgtagattttgtacatactttcatgcagttgtatatccgtatgaaatttctgtttcctttcattcatttttgggatatctttattatacaactttctgatctaattgtcattttattgtttggttttgtttatgctacgattattgtcattaaccag

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