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AAAAATACTTGCCAACACTGATGGACAACGCTTGCTTAGGATGCTTGAGAGTAGAGCATTTGAGGGCTCTAGAGGACCTCCTCAACAAATAAACACCAAGgtagtgatatatattattttgttccacataacttggttctatttacatttattcttctgtcacaatggaaattttgttagaccctacaagcctatttgtt...
species | Zea mays |
transcript | GRMZM2G042992_T01 |
intron # | 16 |
splice site | 5' |
intron type | U2 |
EST: GAGCATTTGAGGGCTCTAGAGGACCTCCTCAACAAATAAACACCAAG CCTCCAATTGTCGCCCTTGGTCCTGTTTCAAATGTCAGCAGTCCTATAGCAEST: gi|211316883|gb|FL253819.1|FL253819
genomic: GAGCATTTGAGGGCTCTAGAGGACCTCCTCAACAAATAAACACCAAGgtagtgatat ... tttattgcagCCTCCAATTGTCGCCCTTGGTCCTGTTTCAAATGTCAGCAGTCCTATAGCA
EST: GTAGAGCATTTGAGGGCTCTAGAGGACCTCCTCAACAAATAAACACCAAG CCTCCAATTGTCGCCCTTGGTCCTGTTTCAAATGTCAGCAGTCCTATAGCAEST: gi|93014018|gb|EB639538.1|EB639538
genomic: GTAGAGCATTTGAGGGCTCTAGAGGACCTCCTCAACAAATAAACACCAAGgtagtgatat ... tttattgcagCCTCCAATTGTCGCCCTTGGTCCTGTTTCAAATGTCAGCAGTCCTATAGCA
EST: GAGCATTTGAGGGCTCTAGAGGACCTCCTCAACAAATAAACACCCAAG CCTCCAATTGTCGCCCTTGGTCCTGTTTCAAATGTCAGCAGTCCTATAGCEST: gi|76929334|gb|DV171965.1|DV171965
genomic: GAGCATTTGAGGGCTCTAGAGGACCTCCTCAACAAATAAACA-CCAAGgtagtgatat ... tttattgcagCCTCCAATTGTCGCCCTTGGTCCTGTTTCAAATGTCAGCAGTCCTATAGC
EST: GTAGAGCATTTGAGGGCTCTAGAGGACCTCCTCAACAAATAAACACCAAG CCTCCAATTGTCGCCCTTGGTCCTGTTTCAAATGTCAGCAGTCCTATAGCAEST: gi|211316876|gb|FL253812.1|FL253812
genomic: GTAGAGCATTTGAGGGCTCTAGAGGACCTCCTCAACAAATAAACACCAAGgtagtgatat ... tttattgcagCCTCCAATTGTCGCCCTTGGTCCTGTTTCAAATGTCAGCAGTCCTATAGCA
EST: GTAGAGCATTTGAGGGCTCTAGAGGACCTCCTCAACAAATAAACACCAAG CCTCCAATTGTCGCCCTTGGTCCTGTTTCAAATGTCAGCAGTCCTATAGCAEST: gi|211316881|gb|FL253817.1|FL253817
genomic: GTAGAGCATTTGAGGGCTCTAGAGGACCTCCTCAACAAATAAACACCAAGgtagtgatat ... tttattgcagCCTCCAATTGTCGCCCTTGGTCCTGTTTCAAATGTCAGCAGTCCTATAGCA
EST: GTAGAGCATTTGAGGGCTCTAGAGGACCTCCTCAACAAATAAACACCAAG CCTCCAATTGTCGCCCTTGGTCCTGTTTCAAATGTCAGCAGTCCTATAGCAEST: gi|211316879|gb|FL253815.1|FL253815
genomic: GTAGAGCATTTGAGGGCTCTAGAGGACCTCCTCAACAAATAAACACCAAGgtagtgatat ... tttattgcagCCTCCAATTGTCGCCCTTGGTCCTGTTTCAAATGTCAGCAGTCCTATAGCA
EST: GTAGAGCATTTGAGGGCTCTAGAGGACCTCCTCAACAAATAAACACCAAG CCTCCAATTGTCGCCCTTGGTCCTGTTTCAAATGTCAGCAGTCCTATAGCA
genomic: GTAGAGCATTTGAGGGCTCTAGAGGACCTCCTCAACAAATAAACACCAAGgtagtgatat ... tttattgcagCCTCCAATTGTCGCCCTTGGTCCTGTTTCAAATGTCAGCAGTCCTATAGCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AAAAATACTTGCCAACACTGATGGACAACGCTTGCTTAGGATGCTTGAGAGTAGAGCATTTGAGGGCTCTAGAGGACCTCCTCAACAAATAAACACCAAGgtagtgatatatattattttgttccacataacttggttctatttacatttattcttctgtcacaatggaaattttgttagaccctacaagcctatttgtt
- - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aatggaaa