1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' |
CGACCAAGCCGCTTTCATCCTGAGCATGCCGAAACGGAAGCCGATGGACGAGACACAGGAAACGCTGCGGACCTCCGCCTTCCCCAGCTCACACGTCAAGgtatatcccttgcagctgcaaaccatgtgtcatatgaaacatctaccttgccaatgcttcagatctcgctgccatttgcatctcctgtcaccgttccaagctgaccttgcaaaaactccgtag
species | Zea mays |
transcript | GRMZM2G037923_T02 |
intron # | 16 |
splice site | 5' |
intron type | U2 |
EST: AGACACAGGAAACGCTGCGGACCTCCGCCTTCCCCAGCTCACACGTCAAG GAGAAATGGGCCAAGAACCTCTACATCGCTTCGATTTGCTTCGGGCGGACCEST: gi|21432270|gb|BQ547760.1|BQ547760
genomic: AGACACAGGAAACGCTGCGGACCTCCGCCTTCCCCAGCTCACACGTCAAGgtatatccct ... aactccgtagGAGAAATGGGCCAAGAACCTCTACATCGCTTCGATTTGCTTCGGGCGGACC
EST: AGACACAGGAAACGCTGCGGACCTCCGCCTTCCCCAGCTCACACGTCAAG GAGAAATGGGCCAAGAACCTCTACATCGCTTCGATTTGCTTCGGGCGGACCEST: gi|22473314|gb|BU037794.1|BU037794
genomic: AGACACAGGAAACGCTGCGGACCTCCGCCTTCCCCAGCTCACACGTCAAGgtatatccct ... aactccgtagGAGAAATGGGCCAAGAACCTCTACATCGCTTCGATTTGCTTCGGGCGGACC
EST: AGACACAGGAAACGCTGCGGACCTCCGCCTTCCCCAGCTCACACGTCAAG GAGAAATGGGCCAAGAACCTCTACATCGCTTCGATTTGCTTCGGGCGGACCEST: gi|211493560|gb|FL280135.1|FL280135
genomic: AGACACAGGAAACGCTGCGGACCTCCGCCTTCCCCAGCTCACACGTCAAGgtatatccct ... aactccgtagGAGAAATGGGCCAAGAACCTCTACATCGCTTCGATTTGCTTCGGGCGGACC
EST: AGACACAGGAAACGCTGCGGACCTCCGCCTTCCCCAGCTCACACGTCAAG GAGAAATGGGCCAAGAACCTCTACATCGCTTCGATTTGCTTCGGGCGGACCEST: gi|101385454|gb|EB814773.1|EB814773
genomic: AGACACAGGAAACGCTGCGGACCTCCGCCTTCCCCAGCTCACACGTCAAGgtatatccct ... aactccgtagGAGAAATGGGCCAAGAACCTCTACATCGCTTCGATTTGCTTCGGGCGGACC
EST: AGACACAGGAAACGCTGCGGACCTCCGCCTTCCCCAGCTCACACGTCAAG GAGAAATGGGCCAAGAACCTCTACATCGCTTCGATTTGCTTCGGGCGGACCEST: gi|33096596|gb|CF056590.1|CF056590
genomic: AGACACAGGAAACGCTGCGGACCTCCGCCTTCCCCAGCTCACACGTCAAGgtatatccct ... aactccgtagGAGAAATGGGCCAAGAACCTCTACATCGCTTCGATTTGCTTCGGGCGGACC
EST: AGACACAGGAAACGCTGCGGACCTCCGCCTTCCCCAGCTCACACGTCAAG GAGAAATGGGCCAAGAACCTCTACATCGCTTCGATTTGCTTCGGGCGGACCEST: gi|211124333|gb|FL444269.1|FL444269
genomic: AGACACAGGAAACGCTGCGGACCTCCGCCTTCCCCAGCTCACACGTCAAGgtatatccct ... aactccgtagGAGAAATGGGCCAAGAACCTCTACATCGCTTCGATTTGCTTCGGGCGGACC
EST: AGACACAGGAAACGCTGCGGACCTCCGCCTTCCCCAGCTCACACGTCAAG GAGAAATGGGCCAAGAACCTYTACATCGCTTCGATTTGCTTCGGGCGGACCEST: gi|22713641|gb|BU197414.1|BU197414
genomic: AGACACAGGAAACGCTGCGGACCTCCGCCTTCCCCAGCTCACACGTCAAGgtatatccct ... aactccgtagGAGAAATGGGCCAAGAACCTCTACATCGCTTCGATTTGCTTCGGGCGGACC
EST: AGACACAGGAAACGCTGCGGACCTCCGCCTTCCCCAGCTCACACGTCAAG GAGAAATGGGCCAAGAACCTCTACATCGCTTCGATTTGCTTCGGGCGGACCEST: gi|211490684|gb|FL280131.1|FL280131
genomic: AGACACAGGAAACGCTGCGGACCTCCGCCTTCCCCAGCTCACACGTCAAGgtatatccct ... aactccgtagGAGAAATGGGCCAAGAACCTCTACATCGCTTCGATTTGCTTCGGGCGGACC
EST: AGACACAGGAAACGCTGCGGACCTCCGCCTTCCCCAGCTCACACGTCAAG GAGAAATGGGCCAAGAACCTCTACATCGCTTCGATTTGCTTCGGGCGGACCEST: gi|22545509|gb|BU097868.1|BU097868
genomic: AGACACAGGAAACGCTGCGGACCTCCGCCTTCCCCAGCTCACACGTCAAGgtatatccct ... aactccgtagGAGAAATGGGCCAAGAACCTCTACATCGCTTCGATTTGCTTCGGGCGGACC
EST: AGACACAGGAAACGCTGCGGACCTCCGCCTTCCCCAGCTCACACGTCAAG GAGAAATGGGCCAAGAAACTCTACATCGCTTCGATTTGCTTCGGGCGGAEST: gi|4225592|gb|AI396045.1|AI396045
genomic: AGACACAGGAAACGCTGCGGACCTCCGCCTTCCCCAGCTCACACGTCAAGgtatatccct ... aactccgtagGAGAAATGGGCCAAGAACCTCTACATCGCTTCGATTTGCTTCGGGCGGA
EST: GACCTCCGCCTTCCCCAGCTCACACGTCAAG GAGAAATGGGCCAAGAACCTCTACATCGCTTCGATTTGCTTCGGGCGGACCEST: gi|24770058|gb|CA405187.1|CA405187
genomic: GACCTCCGCCTTCCCCAGCTCACACGTCAAGgtatatccct ... aactccgtagGAGAAATGGGCCAAGAACCTCTACATCGCTTCGATTTGCTTCGGGCGGACC
EST: AGACACAGGAAACGCTGCGGACCTCCGCCTTCCCCAGCTCACACGTCAAG GAGAAATGGGCCAAGAACCTCTACATCGCTTCGATTTGCTTCGGGCGGACCEST: gi|61118390|gb|DN559351.1|DN559351
genomic: AGACACAGGAAACGCTGCGGACCTCCGCCTTCCCCAGCTCACACGTCAAGgtatatccct ... aactccgtagGAGAAATGGGCCAAGAACCTCTACATCGCTTCGATTTGCTTCGGGCGGACC
EST: AGACACAGGAAACTCTGCGGACCTCCGCCTTCCCCAGCTCACACGTCAAG GAGAAATGGGCCAAGAACCTCTACATCGCTTCGATTTGCTTCGGGCGGACCEST: gi|40303539|gb|CK347926.1|CK347926
genomic: AGACACAGGAAACGCTGCGGACCTCCGCCTTCCCCAGCTCACACGTCAAGgtatatccct ... aactccgtagGAGAAATGGGCCAAGAACCTCTACATCGCTTCGATTTGCTTCGGGCGGACC
EST: AGACACAGGAAACGCTGCGGACCTCCGCCTTCCCCAGCTCACACGTCAAG GAGAAATGGGCCAAGAACCTCTACATCGCTTCGATTTGCTTCGGGCGGACCEST: gi|32936218|gb|CF041030.1|CF041030
genomic: AGACACAGGAAACGCTGCGGACCTCCGCCTTCCCCAGCTCACACGTCAAGgtatatccct ... aactccgtagGAGAAATGGGCCAAGAACCTCTACATCGCTTCGATTTGCTTCGGGCGGACC
EST: AGACACAGGAAACGCTGCGGACCTCCGCCTTCCCCAGCTCACACGTCAAG GAGAAATGGGCCAAGAACCTCTACATCGCTTCGATTTGCTTCGGGCGGACCEST: gi|60353792|gb|DN220765.1|DN220765
genomic: AGACACAGGAAACGCTGCGGACCTCCGCCTTCCCCAGCTCACACGTCAAGgtatatccct ... aactccgtagGAGAAATGGGCCAAGAACCTCTACATCGCTTCGATTTGCTTCGGGCGGACC
EST: AGACACAGGAAACGCTGCGGACCTCCGCCTTCCCCAGCTCACACGTCAAG GAGAAATGGGCCAAGAACCTCTACATCGCTTCGATTTGCTTCGGGCGGACCEST: gi|32858553|gb|CD998234.1|CD998234
genomic: AGACACAGGAAACGCTGCGGACCTCCGCCTTCCCCAGCTCACACGTCAAGgtatatccct ... aactccgtagGAGAAATGGGCCAAGAACCTCTACATCGCTTCGATTTGCTTCGGGCGGACC
EST: AGACACAGGAAACGCTGCGGACCTCCGCCTTCCCCAGCTCACACGTCAAG GAGAAATGGGCCAAGAACCTCTACATCGCTTCGATTTGCTTCGGGCGGACCEST: gi|211490681|gb|FL280128.1|FL280128
genomic: AGACACAGGAAACGCTGCGGACCTCCGCCTTCCCCAGCTCACACGTCAAGgtatatccct ... aactccgtagGAGAAATGGGCCAAGAACCTCTACATCGCTTCGATTTGCTTCGGGCGGACC
EST: AGACACAGGAAACGCTGCGGACCTCCGCCTTCCCCAGCTCACACGTCAAG GAGAAATGGGCCAAGAACCTCTACATCGCTTCGATTTGCTTCGGGCGGACCEST: gi|21987385|gb|BQ778913.1|BQ778913
genomic: AGACACAGGAAACGCTGCGGACCTCCGCCTTCCCCAGCTCACACGTCAAGgtatatccct ... aactccgtagGAGAAATGGGCCAAGAACCTCTACATCGCTTCGATTTGCTTCGGGCGGACC
EST: AGACACAGGAAACGCTGCGGACCTCCGCCTTCCCCAGCTCACACGTCAAG GAGAAATGGGCCAAGAACCTCTACATCGCTTCGATTTGCTTCGGGCGGACCEST: gi|87156443|gb|DY401232.1|DY401232
genomic: AGACACAGGAAACGCTGCGGACCTCCGCCTTCCCCAGCTCACACGTCAAGgtatatccct ... aactccgtagGAGAAATGGGCCAAGAACCTCTACATCGCTTCGATTTGCTTCGGGCGGACC
EST: AGACACAGGAAACGCTGCGGACCTCCGCCTTCCCCAGCTCACACGTCAAG GAGAAATGGGCCAAGAACCTCTAEST: gi|78083128|gb|DV511521.1|DV511521
genomic: AGACACAGGAAACGCTGCGGACCTCCGCCTTCCCCAGCTCACACGTCAAGgtatatccct ... aactccgtagGAGAAATGGGCCAAGAACCTCTA
EST: AGACACAGGAAACGCTGCGGACCTCCGCCTTCCCCAGCTCACACGTCAAG GAGAAATGGGCCAAGAACCTCTACATCGCTTCGATTTGCTTCGGGCGGACCEST: gi|26559413|gb|CA831648.1|CA831648
genomic: AGACACAGGAAACGCTGCGGACCTCCGCCTTCCCCAGCTCACACGTCAAGgtatatccct ... aactccgtagGAGAAATGGGCCAAGAACCTCTACATCGCTTCGATTTGCTTCGGGCGGACC
EST: AGACACAGGAAACGCTGCGGACCTCCGCCTTCCCCAGCTCACACGTCAAG GAGAAATGGGCCAAGAACCTCTACATCGCTTCGATTTGCTTCGGGCGGACCEST: gi|67012040|gb|CO440789.1|CO440789
genomic: AGACACAGGAAACGCTGCGGACCTCCGCCTTCCCCAGCTCACACGTCAAGgtatatccct ... aactccgtagGAGAAATGGGCCAAGAACCTCTACATCGCTTCGATTTGCTTCGGGCGGACC
EST: AGACACAGGAAACGCTGCGGACCTCCGCCTTCCCCAGCTCACACGTCAAG GAGAAATGGGCCAAGAACCTCTACATCGCTTCGATTTGCTTCGGGCGGACCEST: gi|5058786|gb|AI737262.1|AI737262
genomic: AGACACAGGAAACGCTGCGGACCTCCGCCTTCCCCAGCTCACACGTCAAGgtatatccct ... aactccgtagGAGAAATGGGCCAAGAACCTCTACATCGCTTCGATTTGCTTCGGGCGGACC
EST: AGACACAGGAAACGCTGCGGACCTCCGCCTTCCCCAGCTCACACGTCAAG GAGAAATGGGCCAAGAACCTCTACATCGCTTCGATTTGCTTCGGGCGGACCEST: gi|31356845|gb|CD441202.1|CD441202
genomic: AGACACAGGAAACGCTGCGGACCTCCGCCTTCCCCAGCTCACACGTCAAGgtatatccct ... aactccgtagGAGAAATGGGCCAAGAACCTCTACATCGCTTCGATTTGCTTCGGGCGGACC
EST: AGACACAGGAAACGCTGCGGACCTCCGCCTTCCCCAGCTCACACGTCAAG GAGAAATGGGCCAAGAACCTCTACATCGCTTCGATTTGCTTCGGGCGGACCEST: gi|148933318|gb|EC876975.2|EC876975
genomic: AGACACAGGAAACGCTGCGGACCTCCGCCTTCCCCAGCTCACACGTCAAGgtatatccct ... aactccgtagGAGAAATGGGCCAAGAACCTCTACATCGCTTCGATTTGCTTCGGGCGGACC
EST: AGACACAGGAAACGCTGCGGACCTCCGCCTTCCCCAGCTCACACGTCAAG GAGAAATGGGCCAAGAACCTCTACATCGCTTCGATTTGCTTCGGGCGGACCEST: gi|31350536|gb|CD434893.1|CD434893
genomic: AGACACAGGAAACGCTGCGGACCTCCGCCTTCCCCAGCTCACACGTCAAGgtatatccct ... aactccgtagGAGAAATGGGCCAAGAACCTCTACATCGCTTCGATTTGCTTCGGGCGGACC
EST: AGACACAGGAAACGCTGCGGACCTCCGCCTTCCCCAGCTCACACGTCAAG GAGAAATGGGCCAAGAACCTCTACATCGCTTCGATTTGCTTCGGGCGGACC
genomic: AGACACAGGAAACGCTGCGGACCTCCGCCTTCCCCAGCTCACACGTCAAGgtatatccct ... aactccgtagGAGAAATGGGCCAAGAACCTCTACATCGCTTCGATTTGCTTCGGGCGGACC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CGACCAAGCCGCTTTCATCCTGAGCATGCCGAAACGGAAGCCGATGGACGAGACACAGGAAACGCTGCGGACCTCCGCCTTCCCCAGCTCACACGTCAAGgtatatcccttgcagctgcaaaccatgtgtcatatgaaacatctaccttgccaatgcttcagatctcgctgccatttgcatctcctgtcaccgttccaagctgaccttgcaaaaactccgtag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA