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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTTCCCCCATCGTCAACACCACCACCCCATAAGCCTGTTCTTGTGGGTGATCTAAAGTTGTCTGATTTTAAACAATTTTTGGAAAACAAAGGCTGGCAGgtaggtttattatattgaattgtgagtctttgtgtcttccttgggacctatatggccattatccaaacttgtagttttaggagtggagatgaatatttca...

Basic information

species Zea mays
transcript GRMZM2G036050_T01
intron # 16
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G036050_T04 (Zea mays), 5'ss of exon 16
lower sequence: LOC_Os09g39590.1 (Oryza sativa), 5'ss of exon 16
GCTTCCCCCATCGTCAACACCACCACCCCATAAGCCTGTTCTTGTGGGTGATCTAAAGTTGTCTGATTTTAAACAATTTTTGGAAAACAAAGGCTGGCAGgtaggtttattatattgaat-tgtgagtctttgtgtcttccttgggacct--atatggccattatccaaacttgtagttttaggagtg-gagatgaatatttca
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GTTGCCCCCGTCGTCAACTCCAGCAGCCCACAAGTCAGTTCTTGTGGGTGATTTGAAATTGGCTGATTTTAAGCAATTCCTGGCAAATAAAGGTTTGCAGgtaagttttcattttcaaatatgttagtact-gtataatattaagttcttggatatactggcccttcacgttt-cagtgttgagagagagagagagagagag--
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71765702|gb|DR963639.1|DR963639
EST:     ATCTAAAGTTGTCTGATTTTAAACAATTTTTGGAAAACAAAGGCTGGCAG                         GTTGAATTTGCCGGAGGTGCTTTACGGTGTGGCGAATACATCATGGTGCGC
genomic: ATCTAAAGTTGTCTGATTTTAAACAATTTTTGGAAAACAAAGGCTGGCAGgtaggtttat ... gctgttgcagGTTGAATTTGCCGGAGGTGCTTTACGGTGTGGCGAATACATCATGGTGCGC