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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGTTGTGCCTGGGATGGGCGAATTTGGAGACAGATACTTTGGAACAGATGATTATCAGTCATCGACGCCATTCTTTTGTGACGATAAAAATCGTGTCAGgtgagattctatttactttgctactagctcaaatttttgccgcttaactagctcacccggcctgcaaccgtgcag

Basic information

species Zea mays
transcript GRMZM2G034143_T02
intron # 16
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G034143_T01 (Zea mays), 5'ss of exon 15
lower sequence: LOC_Os02g17320.2 (Oryza sativa), 5'ss of exon 15
GTGTTGTGCCTGGGATGGGCGAATTTGGAGACAGATACTTTGGAACAGATGATTATCAGTCATCGACGCCATTCTTTTGTGACGATAAAAATCGTGTCAGgtgagattctatttacttt--gctactagctcaaatttttgccgcttaactagctcacccggcctgcaaccgtgcag--------------------------
| ||  | ||||||||||| || ||||| || || |||||||| |||||||||||||||||||| || |||||||||||||| || ||||||||||||||||||||   |  ||  |||    |  | | ||           | |  | |  || |  |||  |  | |    | |                          
GCGTCATCCCTGGGATGGGTGAGTTTGGGGATAGGTACTTTGGGACAGATGATTATCAGTCATCAACACCATTCTTTTGTGATGAGAAAAATCGTGTCAGgtgagacattgcttgttttttattttttgttccctacgagagtgttctattgtctgatgcggattcaagcttatcggcataacaattgacacaactcatgcag

upper sequence: GRMZM2G034143_T01 (Zea mays), 5'ss of exon 15
lower sequence: LOC_Os11g16370.1 (Oryza sativa), 5'ss of exon 15
GTGTTGTGCCTGGGATGGGCGAATTTGGAGACAGATACTTTGGAACAGATGATTATCAGTCATCGACGCCATTCTTTTGTGACGATAAAAATCGTGTCAGgtgagattctatttactttgctactagc-----tcaaatttttgccgcttaactagctcacccg-gcctgcaaccgtgcag--------------------------------------------------
| ||  | ||||| ||||| || |||||||| || ||||| ||||||||||||||||||||||| || ||||||||||| ||||| |||||||||||||||||||  ||| | |   || |||  | |     ||  |||  |||   ||  |    | |     || |   | | |   |                                                  
GCGTCATCCCTGGAATGGGTGAGTTTGGAGATAGGTACTTCGGAACAGATGATTATCAGTCATCAACACCATTCTTTTGCGACGAGAAAAATCGTGTCAGgtgagcctctgtctttgttcctaacatcgttgatcggattcatgcttattggcataatgatttatgcttattagcataatgatttgctagccctgcgagaagctaatctgttgttataaaactcgttgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211032140|gb|FL160201.1|FL160201
EST:     GATTATCAGTCATCGACGCCATTCTTTTGTGACGATAAAAATCGTGTCAG                         GCTCTTGTGACATGAAGCCATGGCTGCGGCGTATTCTCCAATTTTTGAGAA
genomic: GATTATCAGTCATCGACGCCATTCTTTTGTGACGATAAAAATCGTGTCAGgtgagattct ... aaccgtgcagGCTCTTGTGACATGAAGCCATGGCTGCGGCGTATTCTCCAATTTTTGAGAA
EST: gi|211032141|gb|FL160202.1|FL160202
EST:     GATTATCAGTCATCGACGCCATTCTTTTGTGACGATAAAAATCGTGTCAG                         GCTCTTGTGACATGAAGCCATGGCTGCGGCGTATTCTCCAATTTTTGAGAA
genomic: GATTATCAGTCATCGACGCCATTCTTTTGTGACGATAAAAATCGTGTCAGgtgagattct ... aaccgtgcagGCTCTTGTGACATGAAGCCATGGCTGCGGCGTATTCTCCAATTTTTGAGAA
EST: gi|14311434|gb|BG901189.1|BG901189
EST:     GATTATCAGTCATCGACGCCATTCTTTTGTGACGATAAAAATCGTGTCAG                         GCTCTTGTGACATGAAGCCATGGCTGCGGCGTATTCTGCAATTTTTGAGAA
genomic: GATTATCAGTCATCGACGCCATTCTTTTGTGACGATAAAAATCGTGTCAGgtgagattct ... aaccgtgcagGCTCTTGTGACATGAAGCCATGGCTGCGGCGTATTCTCCAATTTTTGAGAA
EST: gi|148943393|gb|EC888452.2|EC888452
EST:     GATTATCAGTCATCGACGCCATTCTTTTGTGACGATAAAAATCGTGTCAG                         GCTCTTGTGACATGAAGCCATGGCTGCGGCGTATTCTCCAATTTTTGAGAA
genomic: GATTATCAGTCATCGACGCCATTCTTTTGTGACGATAAAAATCGTGTCAGgtgagattct ... aaccgtgcagGCTCTTGTGACATGAAGCCATGGCTGCGGCGTATTCTCCAATTTTTGAGAA
EST: gi|211032143|gb|FL160204.1|FL160204
EST:     GATTATCAGTCATCGACGCCATTCTTTTGTGACGATAAAAATCGTGTCAG                         GCTCTTGTGACATGAAGCCATGGCTGSGGCGTATTCTCCAATTTTTGAGA
genomic: GATTATCAGTCATCGACGCCATTCTTTTGTGACGATAAAAATCGTGTCAGgtgagattct ... aaccgtgcagGCTCTTGTGACATGAAGCCATGGCTGCGGCGTATTCTCCAATTTTTGAGA
EST: gi|37385350|gb|CF629812.1|CF629812
EST:     GATTATCAGTCATCGACGCCATTCTTTTGTGACGATAAAAATCGTGTCAG                         GCTCTTGTGACATGAAGCCATGGCTGCGGCGTATTCTCCAATTTTTGAGAA
genomic: GATTATCAGTCATCGACGCCATTCTTTTGTGACGATAAAAATCGTGTCAGgtgagattct ... aaccgtgcagGCTCTTGTGACATGAAGCCATGGCTGCGGCGTATTCTCCAATTTTTGAGAA
EST: gi|60340284|gb|DN207257.1|DN207257
EST:     GATTATCAGTCATCGACGCCATTCTTTTGTGACGATAAAAATCGTGTCAG                         GCTCTTGTGACATGAAGCCATGGCTGCGGCGTATTCTCCAATTTTTGAGAA
genomic: GATTATCAGTCATCGACGCCATTCTTTTGTGACGATAAAAATCGTGTCAGgtgagattct ... aaccgtgcagGCTCTTGTGACATGAAGCCATGGCTGCGGCGTATTCTCCAATTTTTGAGAA
EST: gi|110957674|gb|EE177726.1|EE177726
EST:     GATTATCAGTCATCGACGCCATTCTTTTGTGACGATAAAAATCGTGTCAG                         GCTCTTGTGACATGAAGCCATGGCTGCGGCGTATTCTCCAATTTTTGAGAA
genomic: GATTATCAGTCATCGACGCCATTCTTTTGTGACGATAAAAATCGTGTCAGgtgagattct ... aaccgtgcagGCTCTTGTGACATGAAGCCATGGCTGCGGCGTATTCTCCAATTTTTGAGAA
EST: gi|24766852|gb|CA401999.1|CA401999
EST:     GATTATCAGTCATCGACGCCACTCTTTTGTGACGATAAAAATCGTGTCAG                         GCTCTTGTGACATGAAGCCATGGCTGCGGCGTATTCTCCAATTTTTGAGAA
genomic: GATTATCAGTCATCGACGCCATTCTTTTGTGACGATAAAAATCGTGTCAGgtgagattct ... aaccgtgcagGCTCTTGTGACATGAAGCCATGGCTGCGGCGTATTCTCCAATTTTTGAGAA
EST: gi|67012645|gb|CO441394.1|CO441394
EST:     GATTATCAGTCATCGACGCCATTCTTTTGTGACGATAAAAATCGTGTCAG                         GCTCTTGTGACATGAAGCCATGGCTGCGGCGTATTCTCCAATTTTTGAGAA
genomic: GATTATCAGTCATCGACGCCATTCTTTTGTGACGATAAAAATCGTGTCAGgtgagattct ... aaccgtgcagGCTCTTGTGACATGAAGCCATGGCTGCGGCGTATTCTCCAATTTTTGAGAA
EST: gi|78113248|gb|DV531642.1|DV531642
EST:     GATTATCAGTCATCGACGCCATTCTTTTGTGACGATAAAAATCGTGTCAG                         GCTCTTGTGACATGAAGCCATGGCTGCGGCGTATTCTCCAATTTTTGAGAA
genomic: GATTATCAGTCATCGACGCCATTCTTTTGTGACGATAAAAATCGTGTCAGgtgagattct ... aaccgtgcagGCTCTTGTGACATGAAGCCATGGCTGCGGCGTATTCTCCAATTTTTGAGAA
EST: gi|211032142|gb|FL160203.1|FL160203
EST:     GATTATCAGTCATCGACGCCATTCTTTTGTGACGATAAAAATCGTGTCAG                         GCTCTTGTGACATGAAGCCATGGCTGCGGCGTATTCTCCAATTTTTGAGAA
genomic: GATTATCAGTCATCGACGCCATTCTTTTGTGACGATAAAAATCGTGTCAGgtgagattct ... aaccgtgcagGCTCTTGTGACATGAAGCCATGGCTGCGGCGTATTCTCCAATTTTTGAGAA