Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGCCTCATCTCCGCTTGAGGGATCCTACAGTACCCGAACGAGTAAATGTTGCACTGTATGCAGCGCCAGAATCACGCTATTGCCCAGCCCGGGTTTACGAgtacgtaaactagccactccttgttgaattcccgttgctcccttcatgcatcaatgactcaaagctttagtggccaagagttttctgatcactactgtgtctgttttcatgtag

Basic information

species Zea mays
transcript GRMZM2G032222_T03
intron # 16
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G032222_T03 (Zea mays), 5'ss of exon 16
lower sequence: LOC_Os10g37210.1 (Oryza sativa), 5'ss of exon 16
CGCCTCATCTCCGCTTGAGGGATCCTACAGTACCCGAACGAGTAAATGTTGCACTGTATGCAGCGCCAGAATCACGCTATTGCCCAGCCCGGGTTTACGAgtacgtaaactagccactccttgttgaattcccgttgctcccttcatgcatcaatgactcaaagctttagtggccaagagttttctgatcactactg---tgtctgttttcatgtag
| ||||||||||| |||||||||||||||||||| ||  |||||||| || | |||||||| |  ||||| ||||  ||||| ||||| || ||||||||||| | ||| | |||  || |  ||||||    | |    ||| ||   || ||  ||| || ||   |       |  | || || |||||| |||   |   |||| ||||| ||
CTCCTCATCTCCGTTTGAGGGATCCTACAGTACCGGAGAGAGTAAATCTTCCTCTGTATGCTGGACCAGAGTCACATTATTGTCCAGCTCGAGTTTACGAgtaaggaaattggcctttcttacttgaatgaaagataa--cctaca---attaagtactgaatgcccaaac-----aaggattgctaatcacttctgccatacatgttctcatgcag

upper sequence: GRMZM2G032222_T03 (Zea mays), 5'ss of exon 16
lower sequence: AT2G43400.1 (Arabidopsis thaliana), 5'ss of exon 16
CGCCTCATCTCCGCTTGAGGGATCCTACAGTACCCGAACGAGTAAATGTTGCACTGTATGCAGCGCCAGAATCACGCTATTGCCCAGCCCGGGTTTACGAgtacgtaaactagccactccttgttgaattcccgttgctcccttca--tgcatcaatgactcaaagctttagtggccaagagttttctgatcactactgtgtctgttttca-tgtag-----
|  ||||| | ||||||||||||||||   | || |||   |||||  || ||  |||||| |||||||| ||||| || ||||||||||| |||||||||||  |||  |     |||     |   || |  |  |    |  |  |  ||||||   ||||   ||   ||  |||||   |  |  ||  | |||| |   ||   |   ||      
CATCTCATTTGCGCTTGAGGGATCCTAAGATTCCAGAAAAGGTAAACTTTCCAGAGTATGCTGCGCCAGAGTCACGTTACTGCCCAGCCCGTGTTTACGAgta-ataacttcctttctctaccctctctttctctcaccatatgaaatttgatcaatatatcaag--ttccttgaacaagatactcatcttcgtttctgtattgattcaaaacataaaaaag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|78120295|gb|DV538679.1|DV538679
EST:     GCACTGTATGCAGCGCCAGAATCACGCTATTGCCCAGCCCGGGTTTTCGA                         ATATATTTTTGATGAGAAAGGTGACCCAAAGCTTCATATAAATGCACAGAA
genomic: GCACTGTATGCAGCGCCAGAATCACGCTATTGCCCAGCCCGGGTTTACGAgtacgtaaac ... tttcatgtagATATATCTCTGATGAGAAAGGTGACCCAAAGCTTCATATAAATGCACAGAA
EST: gi|94479206|gb|EB708164.1|EB708164
EST:     GCACTGTATGCAGCGCCAGAATCACGCTATTGCCCAGCCCGGGTTTACGA                         ATATATCTTTGATGAGAAAGGTGACCCAAAGCTTCATATAAATGCACAGAA
genomic: GCACTGTATGCAGCGCCAGAATCACGCTATTGCCCAGCCCGGGTTTACGAgtacgtaaac ... tttcatgtagATATATCTCTGATGAGAAAGGTGACCCAAAGCTTCATATAAATGCACAGAA
EST: gi|71756373|gb|DR954310.1|DR954310
EST:     GCACTGTATGCAGCGCCAGAATCACGCTATTGCCCAGCCCGGGTTTACGA                         ATATATCTTTGATGAGAAAGGTGACCCAAAGCTTCATATAAATGCACAGAA
genomic: GCACTGTATGCAGCGCCAGAATCACGCTATTGCCCAGCCCGGGTTTACGAgtacgtaaac ... tttcatgtagATATATCTCTGATGAGAAAGGTGACCCAAAGCTTCATATAAATGCACAGAA
EST: gi|87157160|gb|DY401949.1|DY401949
EST:     GCACTGTATGCAGCGCCAGAATCACGCTATTGCCCAGCCCGGGTTTACGA                         ATATATCTCTGATGAGAAAGGTGACCCAAAGCTTCATATAAATGCACAGAA
genomic: GCACTGTATGCAGCGCCAGAATCACGCTATTGCCCAGCCCGGGTTTACGAgtacgtaaac ... tttcatgtagATATATCTCTGATGAGAAAGGTGACCCAAAGCTTCATATAAATGCACAGAA
EST: gi|161593692|gb|EY964319.1|EY964319
EST:     CGGGTTTACGA                         ATATATCTCTGATGAGAAAGGTGACCCAAAGCTTCATATAAATGCACAGAA
genomic: CGGGTTTACGAgtacgtaaac ... tttcatgtagATATATCTCTGATGAGAAAGGTGACCCAAAGCTTCATATAAATGCACAGAA
EST: gi|31353246|gb|CD437603.1|CD437603
EST:     GCACTGTATGCAGCGCCAGAATCACGCTATTGCCCAGCCCGGGTTTACGA                         ATATATCTCTGATGAGAAAGGTGACCCAAAGCTTCATATAAATGCACAGAA
genomic: GCACTGTATGCAGCGCCAGAATCACGCTATTGCCCAGCCCGGGTTTACGAgtacgtaaac ... tttcatgtagATATATCTCTGATGAGAAAGGTGACCCAAAGCTTCATATAAATGCACAGAA
EST: gi|76020278|gb|DT947448.1|DT947448
EST:     GCACTGTATGCAGCGCCAGAATCACGCTATTGCCCAGCCCGGGTTTACGA                         ATATATCTTTGATGAGAAAGGTGACCCAAAGCTTCATATAAATGCACAGAA
genomic: GCACTGTATGCAGCGCCAGAATCACGCTATTGCCCAGCCCGGGTTTACGAgtacgtaaac ... tttcatgtagATATATCTCTGATGAGAAAGGTGACCCAAAGCTTCATATAAATGCACAGAA
EST: gi|21809980|gb|BQ668298.1|BQ668298
EST:     GCACTGTATGCAGCGCCAGAATCACGCTATTGCCCAGCCCGGGTTTACGA                         ATATATCTCTGATGAGAAAGGTGACCCAAAGCTTCATATAAATGCACAGAA
genomic: GCACTGTATGCAGCGCCAGAATCACGCTATTGCCCAGCCCGGGTTTACGAgtacgtaaac ... tttcatgtagATATATCTCTGATGAGAAAGGTGACCCAAAGCTTCATATAAATGCACAGAA