1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' |
CAGTGATTGGATTGAAGAGGAAGTTTAATCCTTTCGGTGCTGTGGCGGCCAGTGCTGATCAGGATGGACTACATCATATGGATAAAATAgtaagtatttacacgacattggcaggggaagaataattctcactccattcatttctgtttgttgttttaccttgtcaggtgtagcaccccgtccactccc...
species | Zea mays |
transcript | GRMZM2G030596_T01 |
intron # | 16 |
splice site | 5' |
intron type | U2 |
EST: CTGTGGCGGCCAGTGCTGATCAGGATGGACTACATCATATGGATAAAATA GATGTTTCTCAACGAAGACGGTTTAATGAATACAAAACTTTGACCCTGGAGEST: gi|31349834|gb|CD434191.1|CD434191
genomic: CTGTGGCGGCCAGTGCTGATCAGGATGGACTACATCATATGGATAAAATAgtaagtattt ... acaatatcagGATGTTTCTCAACGAAGACGGTTTAATGAATACAAAACTTTGACCCTGGAG
EST: CTGTGGTGGCCAGTGCTGATCAGGATGGACTACATCATATGGATAAAATA GATGTTTCTCAACGAATACGGTTTAATGAATACAAAACTTTGACCCTGGAGEST: gi|211528377|gb|FL093833.1|FL093833
genomic: CTGTGGCGGCCAGTGCTGATCAGGATGGACTACATCATATGGATAAAATAgtaagtattt ... acaatatcagGATGTTTCTCAACGAAGACGGTTTAATGAATACAAAACTTTGACCCTGGAG
EST: CTGTGGCGGCCAGTGCTGATCAGGATGGACTACATCATATGGATAAAATA GATGTTTCTCAACGAAGACGGKTTAATNAATACAAAACTTTGACCCTGGAGEST: gi|78075869|gb|DV504303.1|DV504303
genomic: CTGTGGCGGCCAGTGCTGATCAGGATGGACTACATCATATGGATAAAATAgtaagtattt ... acaatatcagGATGTTTCTCAACGAAGACGGTTTAATGAATACAAAACTTTGACCCTGGAG
EST: CTGTGGCGGCCAGTGCTGATCAGGATGGACTACATCATATGGATAAAATA GATGTTTCTCAACGAAGACGGTTTAATGAATACAAAACTTTGACCCTGGAGEST: gi|6742642|gb|AW313457.1|AW313457
genomic: CTGTGGCGGCCAGTGCTGATCAGGATGGACTACATCATATGGATAAAATAgtaagtattt ... acaatatcagGATGTTTCTCAACGAAGACGGTTTAATGAATACAAAACTTTGACCCTGGAG
EST: CTGATCAGGATGGACTACATCATATGGATAAAATA GATGTTTCTCAACGAAGACGGTTTAATGAATACAAAACTTTGACCCTGGAGEST: gi|78114930|gb|DV533318.1|DV533318
genomic: CTGATCAGGATGGACTACATCATATGGATAAAATAgtaagtattt ... acaatatcagGATGTTTCTCAACGAAGACGGTTTAATGAATACAAAACTTTGACCCTGGAG
EST: CTGTGGCGGCCAGTGCTGATCAGGATGGACTACATCATATGGATAAAATA GATGTTTCTCAACGAAGACGGTTTAATGAATACAAAACTTTGACCCTGGAGEST: gi|211385800|gb|FL436087.1|FL436087
genomic: CTGTGGCGGCCAGTGCTGATCAGGATGGACTACATCATATGGATAAAATAgtaagtattt ... acaatatcagGATGTTTCTCAACGAAGACGGTTTAATGAATACAAAACTTTGACCCTGGAG
EST: TCATATGGATAAAATA GATGTTTCTCAACGAAGACGGTTTAATGAATACAAAACTTTGACCCTGGAG
genomic: TCATATGGATAAAATAgtaagtattt ... acaatatcagGATGTTTCTCAACGAAGACGGTTTAATGAATACAAAACTTTGACCCTGGAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CAGTGATTGGATTGAAGAGGAAGTTTAATCCTTTCGGTGCTGTGGCGGCCAGTGCTGATCAGGATGGACTACATCATATGGATAAAATAgtaagtatttacacgacattggcaggggaagaataattctcactccattcatttctgtttgttgttttaccttgtcaggtgtagcaccccgtccactccc
- - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA