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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGACTAAATCTGTCGCTGTTACACCTCAAGTTGTGGATCTTCTTGATGGTTTGTCCTCAGGCACATCTCTTCCTGgtcagttcctgatgcttgattatccaaaatataagggaaatttgcaaatacccctaaaagtcaccgagtttgatttccctcccatatcaaactccatgtgacttgaaaggcggcttttgcattttcctattgattagtaaccttccccataatcaatgtatttaatgctactcagtttgcctattcgccag

Basic information

species Zea mays
transcript GRMZM2G030144_T01
intron # 16
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G030144_T03 (Zea mays), 5'ss of exon 15
lower sequence: LOC_Os06g07090.1 (Oryza sativa), 5'ss of exon 16
---AGACTAAATCTGTCGCTGTTACACCTCAAGTTGTGGATCTTCTTGATGGTTTGTCCTCAGGCACATCTCTTCCTGgtcagttcctgatgcttgattatc-caaaatataagggaaatttgcaaatacccctaaaagtcaccgagtttgatttccctcccatatcaaactccatgtgacttgaaaggcggcttttgcattttcctattgattagtaaccttccccataatcaatgtatttaatgctactcagtttgcctattcgccag
   ||||||||  ||   |||||||||| ||||||||||||||||||||||||||||||||| ||||||||||| |||||||| ||||  ||| | | |||     || || | |||    | |||||     | | | | || |    |    |  ||  |  | ||                                                                                                      
CTGAGACTAAAGTTGCACCTGTTACACCCCAAGTTGTGGATCTTCTTGATGGTTTGTCCTCAAGCACATCTCTTTCTGgtcagatcctactgccttactattatctaacattatggagcactacaaatgattatgatatttactgttgctatgcttgcttgctcaccag-----------------------------------------------------------------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|91876800|gb|EB406757.1|EB406757
EST:     TCAAGTTGTGGATCTTCTTGATGGTTTGTCCTCAGGCACATCTCTTCCTG                         ATGAGAACGCAACCTACCCCACAATCACAGCATTCCAGAGTGCAACTTTGA
genomic: TCAAGTTGTGGATCTTCTTGATGGTTTGTCCTCAGGCACATCTCTTCCTGgtcagttcct ... tattcgccagATGAGAACGCAACCTACCCCACAATCACAGCATTCCAGAGTGCAACTTTGA
EST: gi|113701558|gb|EE679062.1|EE679062
EST:     TCAGGCACATTTCTTCTTG                         ATGAGAACGCAACCTACCCCACAATCACAGCATTCCAGAGTGCAACTTTGA
genomic: TCAGGCACATCTCTTCCTGgtcagttcct ... tattcgccagATGAGAACGCAACCTACCCCACAATCACAGCATTCCAGAGTGCAACTTTGA
EST: gi|71433259|gb|DR814309.1|DR814309
EST:     TCAAGTTGTGGATCTTCTTGATGGTTTGTCCTCAGGCACATCTCTTCCTG                         ATGAGAACGCAACCTACCCCACAATCACAGCATTCCAGAGTGCAACTTTGA
genomic: TCAAGTTGTGGATCTTCTTGATGGTTTGTCCTCAGGCACATCTCTTCCTGgtcagttcct ... tattcgccagATGAGAACGCAACCTACCCCACAATCACAGCATTCCAGAGTGCAACTTTGA
EST: gi|67021834|gb|CO450583.1|CO450583
EST:     TCAAGTTGTGGATCTTCTTGATGGTTTGTCCTCAGGCACATCTCTTCCTG                         ATGAGAACGCAACCTACCCCACAATCACAGCATTCCAGAGTGCAACTTTGA
genomic: TCAAGTTGTGGATCTTCTTGATGGTTTGTCCTCAGGCACATCTCTTCCTGgtcagttcct ... tattcgccagATGAGAACGCAACCTACCCCACAATCACAGCATTCCAGAGTGCAACTTTGA
EST: gi|88751809|gb|DY535950.1|DY535950
EST:     TCAAGTTGTGGATCTTCTTGATGGTTTGTCCTCGGGCACATCTCTTCCTG                         ATGAAAACGCACCCTACCCCACAATCACAGCATTCCAGAGTGCAACTTTGA
genomic: TCAAGTTGTGGATCTTCTTGATGGTTTGTCCTCAGGCACATCTCTTCCTGgtcagttcct ... tattcgccagATGAGAACGCAACCTACCCCACAATCACAGCATTCCAGAGTGCAACTTTGA
EST: gi|67037313|gb|CO464163.1|CO464163
EST:     TCAAGTTGTGGATCTTCTTGATGGTTTGTCCTCAGGCACATCTCTTCCTG                         ATGAGAACGCAACCTACCCCACAATCACAGCATTCCAGAGTGCAACTTTGA
genomic: TCAAGTTGTGGATCTTCTTGATGGTTTGTCCTCAGGCACATCTCTTCCTGgtcagttcct ... tattcgccagATGAGAACGCAACCTACCCCACAATCACAGCATTCCAGAGTGCAACTTTGA