Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   		18  
 5'  3'   		19  
 5'  3'   		20  
 5'  3'   
21  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AATTGTCATGAGAACTGTGCGGAACACAGTTGACACTGGACGGACAGTTGTTTGCACAATCCATCAGCCAAGCATCGACATCTTTGAATCTTTTGATGAGgtggctatgagtaatttttgtaagtggttattgcaccttttcaacaattaaatattaacttaagttctcatatgcag

Basic information

species Zea mays
transcript GRMZM2G029506_T01
intron # 16
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G029506_T01 (Zea mays), 5'ss of exon 16
lower sequence: LOC_Os06g36090.2 (Oryza sativa), 5'ss of exon 12
AATTGTCATGAGAACTGTGCGGAACACAGTTGACACTGGACGGACAGTTGTTTGCACAATCCATCAGCCAAGCATCGACATCTTTGAATCTTTTGATGAGgtggctatgagtaatttttgtaagtggttattgcaccttttcaacaattaaatattaacttaagtt----ctcatatgcag
 ||||| |||||||| ||| |||||||||||||||||||||||||||| ||||||||||| || ||||||||||| ||||| |||||  |||||||||||||| |||||| || |||   ||  | || ||| |||||||| |  || |||||| |||||  || |    |||   |||||
CATTGTTATGAGAACAGTGAGGAACACAGTTGACACTGGACGGACAGTGGTTTGCACAATTCACCAGCCAAGCATTGACATATTTGAGGCTTTTGATGAGgtgactatgaatagtttacttacatagtaattccacctttt-agtaactaaatagtaactcgagcttgaactctcgtgcag

upper sequence: GRMZM2G029506_T01 (Zea mays), 5'ss of exon 16
lower sequence: GLYMA13G43140.1 (Glycine max), 5'ss of exon 16
AATTGTCATGAGAACTGTGCGGAACACAGTTGACACTGGACGGACAGTTGTTTGCACAATCCATCAGCCAAGCATCGACATCTTTGAATCTTTTGATGAGgtggctatgag----taatttttgtaagtggt-tattgcaccttttca-----acaattaaatattaacttaagttctcatatgcag---
 ||||| ||||| |||||| | || || |||||||||||| | |||||||| |||||||| || || || || ||||| ||||||||| | ||||| |||||  | |  |     |||||| | |  ||  | | || |  || || |     |    |   |  ||  | ||  | || | ||||    
CATTGTAATGAGGACTGTGAGAAATACTGTTGACACTGGAAGAACAGTTGTATGCACAATTCACCAACCTAGTATCGATATCTTTGAAGCCTTTGACGAGgtatcaacaaactcataatttgtatgtgttatatgtttcttctctttatctccattgctctttggtagataaacatttcttgtgcaccag

upper sequence: GRMZM2G029506_T01 (Zea mays), 5'ss of exon 16
lower sequence: GLYMA08G21540.2 (Glycine max), 5'ss of exon 18
AATTGTCATGAGAACTGTGCGGAACACAGTTGACACTGGACGGACAGTTGTTTGCACAATCCATCAGCCAAGCATCGACATCTTTGAATCTTTTGATGAGgtggc--------tatgagtaattt-ttgtaagtggttatt----gcaccttttcaacaattaaatattaacttaagttctcatatgcag----
 ||||| ||||| |||||| | ||||| || ||||||||| | |||||||| |||||||| || ||||| ||||| || ||||||||| | |||||||||||  |        ||  |   |||| ||||   |   | ||    | | ||  |   |  || |||  | | | || |  || | |   |    
TATTGTTATGAGGACTGTGAGAAACACTGTGGACACTGGAAGAACAGTTGTCTGCACAATTCACCAGCCTAGCATTGATATCTTTGAAGCCTTTGATGAGgtaccaaccaacctacaaaccatttgttgtgtatttcttttctttgtatctcctatcctctttaatgcttaatgaaatattcttttttcgccag

upper sequence: GRMZM2G029506_T01 (Zea mays), 5'ss of exon 16
lower sequence: GLYMA07G01860.1 (Glycine max), 5'ss of exon 17
AATTGTCATGAGAACTGTGCGGAACACAGTTGACACTGGACGGACAGTTGTTTGCACAATCCATCAGCCAAGCATCGACATCTTTGAATCTTTTGATGAGgtggc--------tatgagtaattt-ttgtaagtggttatt----gcaccttttcaacaattaaatattaacttaagttctcatatgcag----
 ||||| ||||| |||||| | ||||| || ||||| ||| | |||||||| |||||||| || ||||| ||||| || ||||||||| | |||||||||||  |        ||  |    ||| ||||   |   | ||    | | ||  |   |  ||  ||| | | | || |  || | | | |    
TATTGTTATGAGGACTGTGAGAAACACTGTGGACACAGGAAGAACAGTTGTCTGCACAATTCACCAGCCTAGCATTGATATCTTTGAAGCCTTTGATGAGgtaccaaccaacctacaaaccgtttgttgtgtatttcttttctttgtatctcctatcctctttgatacttaatgaaatgttctttttccggcag

upper sequence: GRMZM2G029506_T01 (Zea mays), 5'ss of exon 16
lower sequence: GLYMA15G02220.1 (Glycine max), 5'ss of exon 17
AATTGTCATGAGAACTGTGCGGAACACAGTTGACACTGGACGGACAGTTGTTTGCACAATCCATCAGCCAAGCATCGACATCTTTGAATCTTTTGATGAGgtggctatgag----taatttttgtaagtggttattgcaccttttcaacaattaaatattaacttaagttctcatatgcag-
 ||||| ||||| |||||| | ||||| |||||||||||| | |||||||| |||||||| || || || || || || ||||||||| | ||||| |||||  | |  |     |||||| ||| | |  ||  |  | ||      |  ||   ||   |  ||  ||||  | | |   
CATTGTGATGAGGACTGTGAGAAACACTGTTGACACTGGAAGAACAGTTGTATGCACAATTCACCAACCTAGTATTGATATCTTTGAAGCCTTTGACGAGgtaccaactaactcataatttgtgtca-tattttctttatctccattgctctttggtagataaatattttcttgtgtaccag

upper sequence: GRMZM2G029506_T01 (Zea mays), 5'ss of exon 16
lower sequence: Vv09s0002g03640.t01 (Vitis vinifera), 5'ss of exon 15
AATTGTCATGAGAACTGTGCGGAACACAGTTGACACTGGACGGACAGTTGTTTGCACAATCCATCAGCCAAGCATCGACATCTTTGAATCTTTTGATGAGgtggctatgagtaatttttgtaagtggttattgcaccttttcaacaattaaatattaacttaagttctcatatgcag-------------------
 ||||| ||||| || ||| |||||||||| ||||||||| | || ||||| ||||||||||||||||||||||| || ||||| ||| | || |||||||| | ||| |        || || |||| |   || ||||||  |||| |  | |||  ||  ||| ||     ||                    
CATTGTTATGAGGACAGTGAGGAACACAGTGGACACTGGAAGAACTGTTGTCTGCACAATCCATCAGCCAAGCATAGATATCTTCGAAGCCTTCGATGAGgtagatatca--------tgaaattggtca---caacttttct-caatcatgttttatattgtgttgtctctcacaccgatggtattgttcatcag

upper sequence: GRMZM2G029506_T01 (Zea mays), 5'ss of exon 16
lower sequence: Vv09s0002g03560.t01 (Vitis vinifera), 5'ss of exon 6
AATTGTCATGAGAACTGTGCGGAACACAGTTGACACTGGACGGACAGTTGTTTGCACAATCCATCAGCCAAGCATCGACATCTTTGAATCTTTTGATGAGgtggctatga-gtaatttttgtaagtggttattgcaccttttcaacaattaaatat---taacttaagttctcatatgcag---
 ||||| ||||| || ||| |||||||||| ||||||||| | || ||||| ||||||||||||||||||||||| || ||||| ||| | ||  ||||||| | ||| | | ||||  |   |    || |    | | ||  | | |    | |   | ||     |  |  | | ||    
CATTGTTATGAGGACAGTGAGGAACACAGTGGACACTGGAAGAACTGTTGTCTGCACAATCCATCAGCCAAGCATAGATATCTTCGAAGCCTTCAATGAGgtagatatcatgaaattggtcacaacttttctcaatcatgttttatattgtgctgtctctcacaccgatggtattgttcatcag

upper sequence: GRMZM2G029506_T01 (Zea mays), 5'ss of exon 16
lower sequence: Vv09s0002g03630.t01 (Vitis vinifera), 5'ss of exon 17
AATTGTCATGAGAACTGTGCGGAACACAGTTGACACTGGACGGACAGTTGTTTGCACAATCCATCAGCCAAGCATCGACATCTTTGAATCTTTTGATGAGgtggctatgagta--atttttgtaagtggttattgcaccttttcaacaa-ttaaat---attaacttaagttctcatatgcag-----------
 ||||| ||||| || ||| |||||||||| ||||||||| | || ||||| ||||||||||||||||| || ||||| ||||||||| | |||||||||||    |  | ||  || |   |||  | ||  |  |  || | ||    || |||   | |||   |   ||||  | |              
TATTGTGATGAGGACGGTGAGGAACACAGTGGACACTGGAAGAACTGTTGTCTGCACAATCCATCAGCCCAGTATCGATATCTTTGAAGCCTTTGATGAGgtaatgaccaataccatctccataaccgatttctatattttctgaaaggcttcaatggcaataatacagaatctctcacgttacttttcatcag