1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
AGGTAGACTCATTTCGTCATGAGTATAGCTCAATGGCATGCACAGTCGAATTTGTTGATGATGTGCAGTCAGCTATCGATCACATAAATCGTTATGGAAGgtaaggaagttctattttaagtgtattatagctacaataggctgcttttgaccaaaatttggtttcttttcag
species | Zea mays |
transcript | GRMZM2G028535_T01 |
intron # | 16 |
splice site | 5' |
intron type | U2 |
EST: TTTGTTGATGATGTGCAGTCAGCTATCGATCACATAAATCGTTATGGAAG TGCACACACAGACTGCATCATCACAACTGATAGAAGTGCTGCAGAGGCCTTEST: gi|67017479|gb|CO446228.1|CO446228
genomic: TTTGTTGATGATGTGCAGTCAGCTATCGATCACATAAATCGTTATGGAAGgtaaggaagt ... ttcttttcagTGCACACACAGACTGCATCATCACAACTGATAGAAGTGCTGCAGAGGCCTT
EST: TTTGTTGATGATGTGCAGTCAGCTATCGATCACATAAATCGTTATGGAAG TGCACACACAGACTGCATCATCACAACTGATAGAAGTGCTGCGGAGGCCTTEST: gi|211181079|gb|FL441227.1|FL441227
genomic: TTTGTTGATGATGTGCAGTCAGCTATCGATCACATAAATCGTTATGGAAGgtaaggaagt ... ttcttttcagTGCACACACAGACTGCATCATCACAACTGATAGAAGTGCTGCAGAGGCCTT
EST: TTTGTTGATGATGTGCAGTCAGCTATCGATCACATAAATCGTTATGGAAG TGCACACACAGACTGCATCATCACAACTGATAGAAGTGCTGCAGAGGCCTTEST: gi|60355192|gb|DN222165.1|DN222165
genomic: TTTGTTGATGATGTGCAGTCAGCTATCGATCACATAAATCGTTATGGAAGgtaaggaagt ... ttcttttcagTGCACACACAGACTGCATCATCACAACTGATAGAAGTGCTGCAGAGGCCTT
EST: TTTGTTGATGATGTGCAGTCAGCTATCGATCACATAAATCGTTATGGAAG TGCACACACAGACTGCATCATCACAACTGATAGAAGTGCTGCAGAGGCCTTEST: gi|101391685|gb|EB817779.1|EB817779
genomic: TTTGTTGATGATGTGCAGTCAGCTATCGATCACATAAATCGTTATGGAAGgtaaggaagt ... ttcttttcagTGCACACACAGACTGCATCATCACAACTGATAGAAGTGCTGCAGAGGCCTT
EST: TTTGTTGATGATGTGCAGTCAGCTATCGATCACATAAATCGTTATGGAAG TGCACACACAGACTGCATCATCACAACTGATAGAAGTGCTGCAGAGGCCTTEST: gi|149066719|gb|EE286860.2|EE286860
genomic: TTTGTTGATGATGTGCAGTCAGCTATCGATCACATAAATCGTTATGGAAGgtaaggaagt ... ttcttttcagTGCACACACAGACTGCATCATCACAACTGATAGAAGTGCTGCAGAGGCCTT
EST: TTTGTTGATGATGTGCAGTCAGCTATCGATCACATAAATCGTTATGGAAG TGCACACACAGACTGCATCATCACAACTGATAGAAGTGCTGCAGAGGCCTTEST: gi|211181077|gb|FL441225.1|FL441225
genomic: TTTGTTGATGATGTGCAGTCAGCTATCGATCACATAAATCGTTATGGAAGgtaaggaagt ... ttcttttcagTGCACACACAGACTGCATCATCACAACTGATAGAAGTGCTGCAGAGGCCTT
EST: TTTGTTGATGATGTGCAGTCAGCTATCGATCACATAAATCGTTATGGAAG TGCACACACAGACTGCATCATCACAACTGATAGAAGTGCTGCAGAGGCCTTEST: gi|61118748|gb|DN559709.1|DN559709
genomic: TTTGTTGATGATGTGCAGTCAGCTATCGATCACATAAATCGTTATGGAAGgtaaggaagt ... ttcttttcagTGCACACACAGACTGCATCATCACAACTGATAGAAGTGCTGCAGAGGCCTT
EST: TTTGTTGATGATGTGCAGTCAGCTATCGATCACATAAATCGTTATGGAAG TGCACACACAGACTGCATCATCACAACTGATAAAAGTGCTGCAAAGGCCTT
genomic: TTTGTTGATGATGTGCAGTCAGCTATCGATCACATAAATCGTTATGGAAGgtaaggaagt ... ttcttttcagTGCACACACAGACTGCATCATCACAACTGATAGAAGTGCTGCAGAGGCCTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGGTAGACTCATTTCGTCATGAGTATAGCTCAATGGCATGCACAGTCGAATTTGTTGATGATGTGCAGTCAGCTATCGATCACATAAATCGTTATGGAAGgtaaggaagttctattttaagtgtattatagctacaataggctgcttttgaccaaaatttggtttcttttcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG