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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TACTTGAGGAATTCTTTCAATTAAGGCTTGAATTCTATTGTAAGAGAAAGgtacatgtgatgaactttgtcatttttagaatattaactgaaagccatattaaccaatttatttgtgcag

Basic information

species Zea mays
transcript GRMZM2G021270_T02
intron # 16
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211354438|gb|FK991815.1|FK991815
EST:     TACTTGAGGAATTCTTTCAATTAAGGNTTGAATTCTATTGTAAGAGAAAG                         GNAGCATTGTTGAAGAATATCAAGCTGGACTTAAAGAAGCTTGAAAACNAA
genomic: TACTTGAGGAATTCTTTCAATTAAGGCTTGAATTCTATTGTAAGAGAAAGgtacatgtga ... atttgtgcagGAAGCATTGTTGAAGAATATCAAGCTGGACTTAAAGAAGCTTGAAAACAAA
EST: gi|211354445|gb|FK991822.1|FK991822
EST:     TACTTGAGGAATTCTTTCAATTAAGGCTTGAATTCTATTGTAAGAGAAAG                         GAAGCATTGTTGAAGAATATCAAGCTGGACTTAAAGAAGCTTGAAAACAAA
genomic: TACTTGAGGAATTCTTTCAATTAAGGCTTGAATTCTATTGTAAGAGAAAGgtacatgtga ... atttgtgcagGAAGCATTGTTGAAGAATATCAAGCTGGACTTAAAGAAGCTTGAAAACAAA
EST: gi|86465874|gb|DY232247.1|DY232247
EST:     TACTTGAGGAATTCTTTCAATTAAGGCTTGAATTCTATTGTAAGAGAAAG                         GAAGCATTGTTGAAGAATATCAAGCTGGACTTAAAGAAGCTTGAAAACAAA
genomic: TACTTGAGGAATTCTTTCAATTAAGGCTTGAATTCTATTGTAAGAGAAAGgtacatgtga ... atttgtgcagGAAGCATTGTTGAAGAATATCAAGCTGGACTTAAAGAAGCTTGAAAACAAA
EST: gi|211354440|gb|FK991817.1|FK991817
EST:     TACTTGAGGAATTCTTTCAATTAAGGCTTGAATTCTATTGTAAGAGAAAG                         GAAGCATTGTTGAAGAATATCAAGCTGGACTTAAAGAAGCTTGAAAACAAA
genomic: TACTTGAGGAATTCTTTCAATTAAGGCTTGAATTCTATTGTAAGAGAAAGgtacatgtga ... atttgtgcagGAAGCATTGTTGAAGAATATCAAGCTGGACTTAAAGAAGCTTGAAAACAAA
EST: gi|211354441|gb|FK991818.1|FK991818
EST:     TACTTGAGGAATTCTTTCAATTAAGGCTTGAATTCTATTGTAAGAGAAAG                         GAAGCATTGTTGAAGAATATCAAGCTGGACTTAAAGAAGCTTGAAAACAAA
genomic: TACTTGAGGAATTCTTTCAATTAAGGCTTGAATTCTATTGTAAGAGAAAGgtacatgtga ... atttgtgcagGAAGCATTGTTGAAGAATATCAAGCTGGACTTAAAGAAGCTTGAAAACAAA
EST: gi|32930202|gb|CF035014.1|CF035014
EST:     TACTTGAGGAATTCTTTCAATTAAGGCTTGAATTCTATTGTAAGAGAAAG                         GAAGCATTGTTGAAGAATATCAAGCTGGACTTAAAGAAGCTTGAAAACAAA
genomic: TACTTGAGGAATTCTTTCAATTAAGGCTTGAATTCTATTGTAAGAGAAAGgtacatgtga ... atttgtgcagGAAGCATTGTTGAAGAATATCAAGCTGGACTTAAAGAAGCTTGAAAACAAA
EST: gi|211354443|gb|FK991820.1|FK991820
EST:     TACTTGAGGAATTCTTTCAATTAAGGCTTGAATTCTATTGTAAGAGAAAG                         GAAGCATTGTTGAAGAATATCAAGCTGGACTTAAAGAAGCTTGAAAACAAA
genomic: TACTTGAGGAATTCTTTCAATTAAGGCTTGAATTCTATTGTAAGAGAAAGgtacatgtga ... atttgtgcagGAAGCATTGTTGAAGAATATCAAGCTGGACTTAAAGAAGCTTGAAAACAAA
EST: gi|22935395|gb|BU571670.1|BU571670
EST:     GAATTCTATTGTAAGAGAAAG                         GAAGCATTGTTGAAGAATATCAAGCTGGACTTAAAGAAGCTTGAAAACAAA
genomic: GAATTCTATTGTAAGAGAAAGgtacatgtga ... atttgtgcagGAAGCATTGTTGAAGAATATCAAGCTGGACTTAAAGAAGCTTGAAAACAAA
EST: gi|211354442|gb|FK991819.1|FK991819
EST:     TACTTGAGGAATTCTTTCAATTAAGGCTTGAATTCTATTGTAAGAGAAAG                         GAAGCATTGTTGAAGAATATCAAGCTGGACTTAAAGAAGCTTGAAAACAAA
genomic: TACTTGAGGAATTCTTTCAATTAAGGCTTGAATTCTATTGTAAGAGAAAGgtacatgtga ... atttgtgcagGAAGCATTGTTGAAGAATATCAAGCTGGACTTAAAGAAGCTTGAAAACAAA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TACTTGAGGAATTCTTTCAATTAAGGCTTGAATTCTATTGTAAGAGAAAGgtacatgtgatgaactttgtcatttttagaatattaactgaaagccatattaaccaatttatttgtgcag

- - - - - - - - - - - - - - - - - - - -  AAGAGA