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AAACAATTAACTGGCGTCTATGATTTGGTTGCTGTCTTGACACACAAGGGAAGAAGTGCAGACTCTGGCCACTATGTTGGCTGGGTAAAGCAAGATGACGgtcagtcaatcagtattacagcttagttacggtaatcaactgtttcactttattattagtcactgaaatttcatatcgaccaccag
species | Zea mays |
transcript | GRMZM2G017086_T04 |
intron # | 16 |
splice site | 5' |
intron type | U2 |
EST: AAGAAGTGCAGACTCTGGCCACTATGTTGGCTGGGTAAAGCAAGATGACG GAAAATGGATCGAGTTTGATGATGACAATCCAAACATCCGCAAGGAGGAAGEST: gi|5871756|gb|AW018227.1|AW018227
genomic: AAGAAGTGCAGACTCTGGCCACTATGTTGGCTGGGTAAAGCAAGATGACGgtcagtcaat ... cgaccaccagGAAAATGGATCGAGTTTGATGATGACAACCCAAACATCCGCAAGGAGGAAG
EST: AAGAAGTGCAGACTCTGGCCACTATGTTGGCTGGGTAAAGCAAGATGACG GAAAATGGATCGAGTTTGATGATGACAACCCAAACATCCGCAAGGAGGAAGEST: gi|13316051|gb|BG410498.1|BG410498
genomic: AAGAAGTGCAGACTCTGGCCACTATGTTGGCTGGGTAAAGCAAGATGACGgtcagtcaat ... cgaccaccagGAAAATGGATCGAGTTTGATGATGACAACCCAAACATCCGCAAGGAGGAAG
EST: AAGAAGTGCAGACTCTGGCCACTATGTTGGCTGGGTAAAGCAAGATGACG GAAAATGGTTTGTGTTTGATGATGACAACCCAAACATCCGCAAGGAGGAAGEST: gi|13316052|gb|BG410499.1|BG410499
genomic: AAGAAGTGCAGACTCTGGCCACTATGTTGGCTGGGTAAAGCAAGATGACGgtcagtcaat ... cgaccaccagGAAAATGGATCGAGTTTGATGATGACAACCCAAACATCCGCAAGGAGGAAG
EST: AAGAAGTGCAGACTCTGGCCACTATGTTGGCTGGGTAAAGCAAGATGACG GATTATGGATCGAGTTTGATGATGACAACCCAAACATCCGCAAGGAGGAAGEST: gi|12968041|gb|BG264988.1|BG264988
genomic: AAGAAGTGCAGACTCTGGCCACTATGTTGGCTGGGTAAAGCAAGATGACGgtcagtcaat ... cgaccaccagGAAAATGGATCGAGTTTGATGATGACAACCCAAACATCCGCAAGGAGGAAG
EST: AAGAAGTGCAGACTCTGGCCACTATGTTGGCTGGGTAAAGCAAGATGACG GAAAATGGATCGAGTTTGATGATGACAACCCAAACATCCGCAAGGAGGAAGEST: gi|31363376|gb|CD447733.1|CD447733
genomic: AAGAAGTGCAGACTCTGGCCACTATGTTGGCTGGGTAAAGCAAGATGACGgtcagtcaat ... cgaccaccagGAAAATGGATCGAGTTTGATGATGACAACCCAAACATCCGCAAGGAGGAAG
EST: GCAAGATGACG GAAAATGGATCGAGTTTGATGATGACAATCCAAACATCCGCAAGGAGGAAGEST: gi|113672679|gb|DW824943.1|DW824943
genomic: GCAAGATGACGgtcagtcaat ... cgaccaccagGAAAATGGATCGAGTTTGATGATGACAACCCAAACATCCGCAAGGAGGAAG
EST: AGAAGTGCAGACTCTGGACCACTATGTTGGCTGGGTAAAGCAAGATGACGG GAAAATGGATCGAGTTTGATGATGACAACCCAAACATCCGCAAGGAGGAAEST: gi|33093667|gb|CF053661.1|CF053661
genomic: AGAAGTGCAGACTCTGG-CCACTATGTTGGCTGGGTAAAGCAAGATGAC-Ggtcagtcaat ... cgaccaccagGAAAATGGATCGAGTTTGATGATGACAACCCAAACATCCGCAAGGAGGAA
EST: ATGTTGGCTGGGTAAAGCAAGATGACG GAAAATGGATCGAGTTTGATGATGACAACCCAAACATCCGCAAGGAGGAAGEST: gi|32944644|gb|CF049463.1|CF049463
genomic: ATGTTGGCTGGGTAAAGCAAGATGACGgtcagtcaat ... cgaccaccagGAAAATGGATCGAGTTTGATGATGACAACCCAAACATCCGCAAGGAGGAAG
EST: AAGAAGTGCAGACTCTGGCCACTATGTTGGCTGGGTAAAGCAAGATGACG GAAAATGGATCGAGTTTGATGATGACAACCCAAACATCCGCAAGGAGGAAGEST: gi|32930721|gb|CF035533.1|CF035533
genomic: AAGAAGTGCAGACTCTGGCCACTATGTTGGCTGGGTAAAGCAAGATGACGgtcagtcaat ... cgaccaccagGAAAATGGATCGAGTTTGATGATGACAACCCAAACATCCGCAAGGAGGAAG
EST: AAGAAGTGCAGACTCTGGCCACTATGTTGGCTGGGTAAAGCAAGATGACG GAAAATGGATCGAGTTTGATGATGACAACCCAAACATCCGCAAGGAGGAAGEST: gi|32866634|gb|CF006316.1|CF006316
genomic: AAGAAGTGCAGACTCTGGCCACTATGTTGGCTGGGTAAAGCAAGATGACGgtcagtcaat ... cgaccaccagGAAAATGGATCGAGTTTGATGATGACAACCCAAACATCCGCAAGGAGGAAG
EST: AAGAAGTGCAGACTCTGGCCACTATGTTGGCTGGGTAAAGCAAGATGACG GAAAATGGATCGAGTTTGATGATGACAACCCAAACATCCGCAAGGAGGAAGEST: gi|31910881|gb|CD651645.1|CD651645
genomic: AAGAAGTGCAGACTCTGGCCACTATGTTGGCTGGGTAAAGCAAGATGACGgtcagtcaat ... cgaccaccagGAAAATGGATCGAGTTTGATGATGACAACCCAAACATCCGCAAGGAGGAAG
EST: AAGAAGTGCAGACTCTGGCCGCTATGTTGGCTGGGTAAAGCAAGATGACG GAAAATGGATCGAGTTTGATGATGACAACCCAAACATCCGCAAGGAGGAAGEST: gi|67013124|gb|CO441873.1|CO441873
genomic: AAGAAGTGCAGACTCTGGCCACTATGTTGGCTGGGTAAAGCAAGATGACGgtcagtcaat ... cgaccaccagGAAAATGGATCGAGTTTGATGATGACAACCCAAACATCCGCAAGGAGGAAG
EST: AAGAAGTGCAGACTCTGGCCACTATGTTGGCTGGGTAAAGCAAGATGACG GAAAATGGATCGAGTTTGATGATGACAACCCAAACATCCGCAAGGAGGAAGEST: gi|32932882|gb|CF037694.1|CF037694
genomic: AAGAAGTGCAGACTCTGGCCACTATGTTGGCTGGGTAAAGCAAGATGACGgtcagtcaat ... cgaccaccagGAAAATGGATCGAGTTTGATGATGACAACCCAAACATCCGCAAGGAGGAAG
EST: AAGAAGTGCAGACTCTGGCCACTATGTTGGCTGGGTAAAGCAAGATGACG GAAAATGGATCGAGTTTGATGATGACAACCCAAACATCCGCAAGGAGGAAGEST: gi|13177837|gb|BG349020.1|BG349020
genomic: AAGAAGTGCAGACTCTGGCCACTATGTTGGCTGGGTAAAGCAAGATGACGgtcagtcaat ... cgaccaccagGAAAATGGATCGAGTTTGATGATGACAACCCAAACATCCGCAAGGAGGAAG
EST: AAGAAGTGCAGACTCTGGCCACTATGTTGGCTGGGTAAAGCAAGATGACG GAAAATGGATCGAGTTTGATGATGACAACCCAAACATCCGCAAGGAGGAAGEST: gi|16378498|gb|BI992465.1|BI992465
genomic: AAGAAGTGCAGACTCTGGCCACTATGTTGGCTGGGTAAAGCAAGATGACGgtcagtcaat ... cgaccaccagGAAAATGGATCGAGTTTGATGATGACAACCCAAACATCCGCAAGGAGGAAG
EST: AAGAAGTGCAGACTCTGGCCACTATGTTGGCTGGGTAAAGCAAGATGACG GAAAATGGATCGAGTTTGATGATGACAACCCAAACATCCGCAAGGAGGAAGEST: gi|12968042|gb|BG264989.1|BG264989
genomic: AAGAAGTGCAGACTCTGGCCACTATGTTGGCTGGGTAAAGCAAGATGACGgtcagtcaat ... cgaccaccagGAAAATGGATCGAGTTTGATGATGACAACCCAAACATCCGCAAGGAGGAAG
EST: AAGAAGTGCAGACTCTGGCCACTATGTTGGCTGGGTAAAGCAAGATGACG GAAAATGGATCGAGTTTGATGATGACAACCCAAACATCCGCAAGGAGGAAGEST: gi|50332355|gb|CO527481.1|CO527481
genomic: AAGAAGTGCAGACTCTGGCCACTATGTTGGCTGGGTAAAGCAAGATGACGgtcagtcaat ... cgaccaccagGAAAATGGATCGAGTTTGATGATGACAACCCAAACATCCGCAAGGAGGAAG
EST: AAGAAGTGCAGACTTTGGCCACTATGTTGGCTGGGTAAAGCAAGATGACG GAAAATGGATCGAGTTTGATGATGACAACCCAAACATCCGCAAGGAGGAAGEST: gi|32944893|gb|CF049712.1|CF049712
genomic: AAGAAGTGCAGACTCTGGCCACTATGTTGGCTGGGTAAAGCAAGATGACGgtcagtcaat ... cgaccaccagGAAAATGGATCGAGTTTGATGATGACAACCCAAACATCCGCAAGGAGGAAG
EST: AAGAAGTGCAGACTCTGGCCACTATGTTGGCTGGGTAAAGCAAGATGACG GAAAATGGATCGAGTTTGATGATGACAACCCAAACATCCGCAAGGAGGAAGEST: gi|60352250|gb|DN219223.1|DN219223
genomic: AAGAAGTGCAGACTCTGGCCACTATGTTGGCTGGGTAAAGCAAGATGACGgtcagtcaat ... cgaccaccagGAAAATGGATCGAGTTTGATGATGACAACCCAAACATCCGCAAGGAGGAAG
EST: AAGAAGTGCAGACTCTGGCCACTATGTTGGCTGGGTAAAGCAAGATGACG GAAAATGGATCGAGTTTGATGATGACAACCCAAACATCCGCAAGGAGGAAGEST: gi|13177836|gb|BG349019.1|BG349019
genomic: AAGAAGTGCAGACTCTGGCCACTATGTTGGCTGGGTAAAGCAAGATGACGgtcagtcaat ... cgaccaccagGAAAATGGATCGAGTTTGATGATGACAACCCAAACATCCGCAAGGAGGAAG
EST: AAGAAGTGCAGACTCTGGCCACTATGTTGGCTGGGTAAAGCAAGATGACG GAAAATGGATCGAGTTTGATGATGACAACCCAAACATCCGCAAGGAGGAAGEST: gi|211211022|gb|FL456134.1|FL456134
genomic: AAGAAGTGCAGACTCTGGCCACTATGTTGGCTGGGTAAAGCAAGATGACGgtcagtcaat ... cgaccaccagGAAAATGGATCGAGTTTGATGATGACAACCCAAACATCCGCAAGGAGGAAG
EST: AAGAAGTGCAGACTCTGGCCACTATGTTGGCTGGGTAAAGCAAGATGACG GAAAATGGATCGAGTTTGATGATGACAATCCAAACATCCGCAAGGAGGAAGEST: gi|5919412|gb|AW054509.1|AW054509
genomic: AAGAAGTGCAGACTCTGGCCACTATGTTGGCTGGGTAAAGCAAGATGACGgtcagtcaat ... cgaccaccagGAAAATGGATCGAGTTTGATGATGACAACCCAAACATCCGCAAGGAGGAAG
EST: AAGAAGTGCAGACTCTGGCCACTATGTTGGCTGGGTAAAGCAAGATGACG GAAAATGGATCGAGTTTGATGATGCCAACCCAAACATCCGCAAGGAGGAAG
genomic: AAGAAGTGCAGACTCTGGCCACTATGTTGGCTGGGTAAAGCAAGATGACGgtcagtcaat ... cgaccaccagGAAAATGGATCGAGTTTGATGATGACAACCCAAACATCCGCAAGGAGGAAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AAACAATTAACTGGCGTCTATGATTTGGTTGCTGTCTTGACACACAAGGGAAGAAGTGCAGACTCTGGCCACTATGTTGGCTGGGTAAAGCAAGATGACGgtcagtcaatcagtattacagcttagttacggtaatcaactgtttcactttattattagtcactgaaatttcatatcgaccaccag
- - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG