1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' |
AAAATTGGCTATGACAATGCTGCAGCTGTTGCTAAGAAAGCCCACAAAGAAGGAACCACGTTGAAGgtgatctttcgttacttatttcactttgccttggccttgctctgtggtgtattacgtgctatcttagcttaggtgacttgcgcatgttgatatcttggcc...
species | Zea mays |
transcript | GRMZM2G010823_T01 |
intron # | 16 |
splice site | 5' |
intron type | U2 |
EST: ATGCTGCAGCTGTTGCTAAGAAAGCCCACAAAGAAGGAACCACGTTGAAG GAAGCTGCATTAGACCTTGGAGTATTAACGGAGCAAGAATTCCATGAGCTTEST: gi|60357469|gb|DN224442.1|DN224442
genomic: ATGCTGCAGCTGTTGCTAAGAAAGCCCACAAAGAAGGAACCACGTTGAAGgtgatctttc ... ttttccccagGAAGCTGCATTAGACCTTGGAGTATTAACGGAGCAAGAATTCCATGAGCTT
EST: ATGCTGCAGCTGTTGCTAAGAAAGCCCACAAAGAAGGAACCACGTTGAAG GAAGCTGCATTAGACCTTGGAGTATTAACGGAGCAAGAATTCCATGAGCTTEST: gi|149081506|gb|EE170642.2|EE170642
genomic: ATGCTGCAGCTGTTGCTAAGAAAGCCCACAAAGAAGGAACCACGTTGAAGgtgatctttc ... ttttccccagGAAGCTGCATTAGACCTTGGAGTATTAACGGAGCAAGAATTCCATGAGCTT
EST: ATGCTGCAGCTGTTGCTAAGAAAGCCCACAAAGAAGGAACCACGTTGAAG GAAGCTGCATTAGACCTTGGAGTATTAACGGAGCAAGAATTCCATGAGCTTEST: gi|91868642|gb|EB400097.1|EB400097
genomic: ATGCTGCAGCTGTTGCTAAGAAAGCCCACAAAGAAGGAACCACGTTGAAGgtgatctttc ... ttttccccagGAAGCTGCATTAGACCTTGGAGTATTAACGGAGCAAGAATTCCATGAGCTT
EST: ATGCTGCAGCTGTTGCTAAGAAAGCCCACAAAGAAGGAACCACGTTGAAG GAAGCTGCATTAGACCTTGGAGTATTAACGGAGCAAGAATTCCATGAGCTTEST: gi|149089383|gb|EE178622.2|EE178622
genomic: ATGCTGCAGCTGTTGCTAAGAAAGCCCACAAAGAAGGAACCACGTTGAAGgtgatctttc ... ttttccccagGAAGCTGCATTAGACCTTGGAGTATTAACGGAGCAAGAATTCCATGAGCTT
EST: ATGCTGCAGCTGTTGCTAAGAAAGCCCACAAAGAAGGAACCACGTTGAAG GAAGCTGCATTAGACCTTGGAGTATTAACGGAGCAAGAATTCCATGAGCTTEST: gi|116829526|gb|EC868872.1|EC868872
genomic: ATGCTGCAGCTGTTGCTAAGAAAGCCCACAAAGAAGGAACCACGTTGAAGgtgatctttc ... ttttccccagGAAGCTGCATTAGACCTTGGAGTATTAACGGAGCAAGAATTCCATGAGCTT
EST: ATGCTGCAGCTGTTGCTAAGAAAGCCCACAAAGAAGGAACCACGTTGAAG GAGGCTGCATTAGACCTTGGAGTATTAACGGAGCAAGAATTCCAEST: gi|6022572|gb|AW067384.1|AW067384
genomic: ATGCTGCAGCTGTTGCTAAGAAAGCCCACAAAGAAGGAACCACGTTGAAGgtgatctttc ... ttttccccagGAAGCTGCATTAGACCTTGGAGTATTAACGGAGCAAGAATTCCA
EST: ATGCTGCAGCTGTTGCTAAGAAAGCCCACAAAGAAGGAACCACGTTGAAG GAAGCTGCATTAGACCTTGGAGTATTAACGGAGCAAGAATTCCATGAGCTTEST: gi|16926219|gb|BM079287.1|BM079287
genomic: ATGCTGCAGCTGTTGCTAAGAAAGCCCACAAAGAAGGAACCACGTTGAAGgtgatctttc ... ttttccccagGAAGCTGCATTAGACCTTGGAGTATTAACGGAGCAAGAATTCCATGAGCTT
EST: ATGCTGCAACTGTTGATAAGAAAGCCCACAAAAAAGGAACCACGTTGAAG GAAACTGCATTAGACCTTGGAGTATTAACGGAGCAAAAATTCCATGAGCTTEST: gi|5901092|gb|AW042192.1|AW042192
genomic: ATGCTGCAGCTGTTGCTAAGAAAGCCCACAAAGAAGGAACCACGTTGAAGgtgatctttc ... ttttccccagGAAGCTGCATTAGACCTTGGAGTATTAACGGAGCAAGAATTCCATGAGCTT
EST: ATGCTGCAGCTGTTGCTAAGAAAGCCCACAAAGAAGGAACCACGTTGAAG GAAGCTGCATTAGACCTTGNAGTATTAACGGAGCAAGAATTCCATGAGCTTEST: gi|78022604|gb|DV490991.1|DV490991
genomic: ATGCTGCAGCTGTTGCTAAGAAAGCCCACAAAGAAGGAACCACGTTGAAGgtgatctttc ... ttttccccagGAAGCTGCATTAGACCTTGGAGTATTAACGGAGCAAGAATTCCATGAGCTT
EST: ATGCTGCAGCTGTTGCTAAGAAAGCCCACAAAGAAGGAACCACGTTGAAG GAAGCTGCATTAGACCTTGGAGTATTAACGGAGCAAGAATTCCATGAGCTTEST: gi|6102108|gb|AW126578.1|AW126578
genomic: ATGCTGCAGCTGTTGCTAAGAAAGCCCACAAAGAAGGAACCACGTTGAAGgtgatctttc ... ttttccccagGAAGCTGCATTAGACCTTGGAGTATTAACGGAGCAAGAATTCCATGAGCTT
EST: ATGCTGCAGCTGTTGTTAAGAAAGCCCNCAAAGAAGGANCCACGTTGAAG GAAGCTGCATTAGACCTTGGAGTATTAACGGAGCAAGAATTCCATGAGCTTEST: gi|211208053|gb|FL436834.1|FL436834
genomic: ATGCTGCAGCTGTTGCTAAGAAAGCCCACAAAGAAGGAACCACGTTGAAGgtgatctttc ... ttttccccagGAAGCTGCATTAGACCTTGGAGTATTAACGGAGCAAGAATTCCATGAGCTT
EST: ATGCTGCAGCTGTTGCTAAGAAAGCCCACAAAGAAGGAACCACGTTGAAG GAAGCTGCATTAGACCTTGGAGTATTAACGGAGCAAGAATTCCATGAGCTTEST: gi|8930245|gb|BE225009.1|BE225009
genomic: ATGCTGCAGCTGTTGCTAAGAAAGCCCACAAAGAAGGAACCACGTTGAAGgtgatctttc ... ttttccccagGAAGCTGCATTAGACCTTGGAGTATTAACGGAGCAAGAATTCCATGAGCTT
EST: ATGCTGCAGCTGTTGCTAAGAAAGCCCACAAAGAAGGAACCACGTTGAAG GAAGCTGCATTAGACCTTGGAGTATTAACGGAGCAAGATATTTCATGAGCT
genomic: ATGCTGCAGCTGTTGCTAAGAAAGCCCACAAAGAAGGAACCACGTTGAAGgtgatctttc ... ttttccccagGAAGCTGCATTAGACCTTGGAGTATTAACGGAGCAAGA-ATTCCATGAGCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AAAATTGGCTATGACAATGCTGCAGCTGTTGCTAAGAAAGCCCACAAAGAAGGAACCACGTTGAAGgtgatctttcgttacttatttcactttgccttggccttgctctgtggtgtattacgtgctatcttagcttaggtgacttgcgcatgttgatatcttggcc
- - - - - - - - ATGCTG
- - - - - - - - TGCTGC
- - - - - - - - - CTGCAG
- - - - - - - - - - GCAGCT
- - - - - - - - - - - CAGCTG
- - - - - - - - - - - - GCTGTT
- - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG