1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' |
AACAAAGCGAGCTGCACTAAAGAATTCAGAGGGTGAGAATACTCCACCGAGTTCATTCAAGAGACGACGGCAGTCCCTTATGGACGACTATGTGGGCTCGgtaagagaactcaattcagttcatccatgctagtaacctatgtctaccaaagaatgtgtattgtgtggctcaccggttgtaatttcttaatatgtttcag
species | Zea mays |
transcript | GRMZM2G010085_T02 |
intron # | 16 |
splice site | 5' |
intron type | U2 |
EST: GTTCATTCAAGAGACGACGGCAGTCCCTTATGGACGACTATGTGGGCTCG GGAAAGCGTAAGAGAGGCTGACCACGTTTGGCATCCTCCCTTAGACATGCCEST: gi|5901273|gb|AW042373.1|AW042373
genomic: GTTCATTCAAGAGACGACGGCAGTCCCTTATGGACGACTATGTGGGCTCGgtaagagaac ... tatgtttcagGGAAAGCGTAAGAGAGGCTGACCACGTTTGGCATCCTCCCTTAGACATGCC
EST: GTTCATTCAAGAGACGACGGCAGTCCCTTATGGACGACTATGTGGGCTCG GGAAAGCGTAAGAGAGGCTGACCACGTTTGGCATCCTCCCTTAGACATGCCEST: gi|60399555|gb|DN232366.1|DN232366
genomic: GTTCATTCAAGAGACGACGGCAGTCCCTTATGGACGACTATGTGGGCTCGgtaagagaac ... tatgtttcagGGAAAGCGTAAGAGAGGCTGACCACGTTTGGCATCCTCCCTTAGACATGCC
EST: GTTCATTCAAGAGACGACGGCAGTCCCTTATGGACGACTATGTGGGCTCG GGAAAGCGTAAGAGAGGCTGACCACGTTTGGCATCCTCCCTTAGACATGCCEST: gi|61119150|gb|DN560111.1|DN560111
genomic: GTTCATTCAAGAGACGACGGCAGTCCCTTATGGACGACTATGTGGGCTCGgtaagagaac ... tatgtttcagGGAAAGCGTAAGAGAGGCTGACCACGTTTGGCATCCTCCCTTAGACATGCC
EST: GTTCATTCAAGAGACGACGGCAGTCCCTTATGGACGACTATGTGGGCCCG GGAAAGCGTAAGAGAGGCTGACCACGTTTGGCATCCTCCCTTAGACATGCCEST: gi|60342830|gb|DN209803.1|DN209803
genomic: GTTCATTCAAGAGACGACGGCAGTCCCTTATGGACGACTATGTGGGCTCGgtaagagaac ... tatgtttcagGGAAAGCGTAAGAGAGGCTGACCACGTTTGGCATCCTCCCTTAGACATGCC
EST: GTTCATTCAAGAGACGACGGCAGTCCCTTATGGACGACTATGTGGGCTCG GGAAAGCGTAAGAGAGGCTGACCACGTTTGGCATCCTCCCTTAGACATGCCEST: gi|60338945|gb|DN205918.1|DN205918
genomic: GTTCATTCAAGAGACGACGGCAGTCCCTTATGGACGACTATGTGGGCTCGgtaagagaac ... tatgtttcagGGAAAGCGTAAGAGAGGCTGACCACGTTTGGCATCCTCCCTTAGACATGCC
EST: GTTCATTCAAGAGAAGACGGCAGTCCCTTATGGACGACTATGTGGGCTCG GGAAAGCGTAAGAGAGGCTGACCACGTTTGGCATCCTCCCTTAGACATGCCEST: gi|78022398|gb|DV490785.1|DV490785
genomic: GTTCATTCAAGAGACGACGGCAGTCCCTTATGGACGACTATGTGGGCTCGgtaagagaac ... tatgtttcagGGAAAGCGTAAGAGAGGCTGACCACGTTTGGCATCCTCCCTTAGACATGCC
EST: GTTCATTCAAGAGACGACGGCAGTCCCTTATGGACGACTATGTGGGCTCG GGAAAGCGTAAGAGAGGCTGACCACGTTTGGCATCCTCCCTTAGACATGCCEST: gi|109179402|gb|EC379969.1|EC379969
genomic: GTTCATTCAAGAGACGACGGCAGTCCCTTATGGACGACTATGTGGGCTCGgtaagagaac ... tatgtttcagGGAAAGCGTAAGAGAGGCTGACCACGTTTGGCATCCTCCCTTAGACATGCC
EST: GTTCATTCAAGAGACGACGGCAGTCCCTTATGGACGACTATGTGGGCTCG GGAAAGCGTAAGAGAGGCTGACCACGTTTGGCATCCTCCCTTAGACATGCCEST: gi|5915179|gb|AW052820.1|AW052820
genomic: GTTCATTCAAGAGACGACGGCAGTCCCTTATGGACGACTATGTGGGCTCGgtaagagaac ... tatgtttcagGGAAAGCGTAAGAGAGGCTGACCACGTTTGGCATCCTCCCTTAGACATGCC
EST: GTTCATTCAAGAGACGACGGCAGTCCCTTATGGACGACTATGTGGGCTCG GGAAAGCGTAAGAGAGGCTGACCACGTTTGGCATCCTCCCTTAGACATGCC
genomic: GTTCATTCAAGAGACGACGGCAGTCCCTTATGGACGACTATGTGGGCTCGgtaagagaac ... tatgtttcagGGAAAGCGTAAGAGAGGCTGACCACGTTTGGCATCCTCCCTTAGACATGCC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AACAAAGCGAGCTGCACTAAAGAATTCAGAGGGTGAGAATACTCCACCGAGTTCATTCAAGAGACGACGGCAGTCCCTTATGGACGACTATGTGGGCTCGgtaagagaactcaattcagttcatccatgctagtaacctatgtctaccaaagaatgtgtattgtgtggctcaccggttgtaatttcttaatatgtttcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA