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GTGTATGTAAATCTCAAAGGTGACCGTGCTCACGCTGTGAATACCGCCTGGGCAATGCTCGCTTTAATTTATGCTGGACAGgtacaggtcattctgtaatttcacatatgaacaagaacctacaatttaccaatctgttcactcacctcttctctaatactag
species | Zea mays |
transcript | GRMZM2G006937_T01 |
intron # | 16 |
splice site | 5' |
intron type | U2 |
EST: ACGCTGTGAATACCGCCTGGGCAATGCTCGCTTTAATTTATGCTGGACAG TTTGAACGAGATCCAACGCCATTACATCGTGCTGCAAAGGAATTGATCAACEST: gi|4681216|gb|AI629886.1|AI629886
genomic: ACGCTGTGAATACCGCCTGGGCAATGCTCGCTTTAATTTATGCTGGACAGgtacaggtca ... ctaatactagTTTGAACGAGATCCAACGCCATTACATCGTGCTGCAAAGGAATTGATCAAC
EST: ACGCTGTGAATACCGCCTGGGCAATGCTCGCTTTAATTTATGCTGGACAG TTTGAACGAGATCCAACGCCATTACATCGTGCTGCAAAGGAATTGATCAACEST: gi|32844726|gb|CD984407.1|CD984407
genomic: ACGCTGTGAATACCGCCTGGGCAATGCTCGCTTTAATTTATGCTGGACAGgtacaggtca ... ctaatactagTTTGAACGAGATCCAACGCCATTACATCGTGCTGCAAAGGAATTGATCAAC
EST: ATGCTCGCTTTAATTTATGCTGGACAG GTTGAACGAGATCCAACGCCATTACATCGTGCTGCAAAGGAATCGATCAACEST: gi|32833838|gb|CD973516.1|CD973516
genomic: ATGCTCGCTTTAATTTATGCTGGACAGgtacaggtca ... ctaatactagTTTGAACGAGATCCAACGCCATTACATCGTGCTGCAAAGGAATTGATCAAC
EST: ATGCTCGCTTTAATTTATGCTGGACAG TTTGAACGAGATCCAACGCCATTACATCGTGCTGCAAAGGAATTGATCAACEST: gi|33099602|gb|CF059562.1|CF059562
genomic: ATGCTCGCTTTAATTTATGCTGGACAGgtacaggtca ... ctaatactagTTTGAACGAGATCCAACGCCATTACATCGTGCTGCAAAGGAATTGATCAAC
EST: ACGCTGTGAATACCGCCTGGGCAATGCTCGCTTTAATTTATGCTGGACAG TTTGAACGAGATCCAACGCCATTACATCGTGCTGCAAAGGAATTGATCAACEST: gi|211245891|gb|FL430652.1|FL430652
genomic: ACGCTGTGAATACCGCCTGGGCAATGCTCGCTTTAATTTATGCTGGACAGgtacaggtca ... ctaatactagTTTGAACGAGATCCAACGCCATTACATCGTGCTGCAAAGGAATTGATCAAC
EST: ACGCTGTGAATACCGCCTGGGCAATGCTCGCTTTAATTTATGCTGGACAG TTTGAACGAGATCCAACGCCATTACATTGTGCTGCAAAGGAATTGATCAACEST: gi|32845053|gb|CD984734.1|CD984734
genomic: ACGCTGTGAATACCGCCTGGGCAATGCTCGCTTTAATTTATGCTGGACAGgtacaggtca ... ctaatactagTTTGAACGAGATCCAACGCCATTACATCGTGCTGCAAAGGAATTGATCAAC
EST: TGCTCGCTTTAATTTATGCTGGACAG TTTGAACGAGATCCAACGCCATTACATCGTGCTGCAAAGGAATTGATCAACEST: gi|211357851|gb|FL385254.1|FL385254
genomic: TGCTCGCTTTAATTTATGCTGGACAGgtacaggtca ... ctaatactagTTTGAACGAGATCCAACGCCATTACATCGTGCTGCAAAGGAATTGATCAAC
EST: ACGCTGTGAATACCGCCTGGGCAATGCTCGCTTTAATTTATGCTGGACAG TTTGAACGAGATCCAACGCCATTACATTGTGCTGCAAAGGAATTGATCAACEST: gi|148929654|gb|EC876148.2|EC876148
genomic: ACGCTGTGAATACCGCCTGGGCAATGCTCGCTTTAATTTATGCTGGACAGgtacaggtca ... ctaatactagTTTGAACGAGATCCAACGCCATTACATCGTGCTGCAAAGGAATTGATCAAC
EST: TGAATACCGCCTGGGCAATGCTCGCTTTATTTTATGCTGGACAG TTTGAACGAGATCCAACGCCATTACATCGTGCTGCAAAGGAATTGATCAAC
genomic: TGAATACCGCCTGGGCAATGCTCGCTTTAATTTATGCTGGACAGgtacaggtca ... ctaatactagTTTGAACGAGATCCAACGCCATTACATCGTGCTGCAAAGGAATTGATCAAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTGTATGTAAATCTCAAAGGTGACCGTGCTCACGCTGTGAATACCGCCTGGGCAATGCTCGCTTTAATTTATGCTGGACAGgtacaggtcattctgtaatttcacatatgaacaagaacctacaatttaccaatctgttcactcacctcttctctaatactag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA