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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CATGATCCATCCGGTTAATATCAGTTCCCGGTACTCGAGTTCGCTGGCCGCGTCTGCGATCACGTGGCAGGATGCAGAGAATAGCTTCCTGAGAGTGAAGgcaagtagtagagtctgtcgcatcgcatccgtcctagcctgcgcggctaaggccttgttcgtttctatcggattggtaggccggaacgattcctatccgg...

Basic information

species Zea mays
transcript GRMZM2G006130_T06
intron # 16
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|4152199|gb|AI372333.1|AI372333
EST:     CGTCTGCGATCACGTGGCAGGATGCAGAGAATAGCTTCCTGAGAGTGAAG                         GTCGTGAACTTCGGGTCGGACACCGTTAGCCTCACGGTCTCCACGAGCGGG
genomic: CGTCTGCGATCACGTGGCAGGATGCAGAGAATAGCTTCCTGAGAGTGAAGgcaagtagta ... tgctgtgcagGTCGTGAACTTCGGGTCGGACACCGTTAACCTCACGGTCTCCACGAGCGGA
EST: gi|150037294|gb|DY843524.1|DY843524
EST:     CGTCTGCGATCACGTGGCAAGATGCAGAGAATAGCTTCCTGAGAGTGAAG                         GTCGTGAACTTCGGGTCGGACACCGTTAGCCTCACGGTCTCCACGAGCGGA
genomic: CGTCTGCGATCACGTGGCAGGATGCAGAGAATAGCTTCCTGAGAGTGAAGgcaagtagta ... tgctgtgcagGTCGTGAACTTCGGGTCGGACACCGTTAACCTCACGGTCTCCACGAGCGGA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CATGATCCATCCGGTTAATATCAGTTCCCGGTACTCGAGTTCGCTGGCCGCGTCTGCGATCACGTGGCAGGATGCAGAGAATAGCTTCCTGAGAGTGAAGgcaagtagtagagtctgtcgcatcgcatccgtcctagcctgcgcggctaaggccttgttcgtttctatcggattggtaggccggaacgattcctatccgg

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