1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' |
CATGATCCATCCGGTTAATATCAGTTCCCGGTACTCGAGTTCGCTGGCCGCGTCTGCGATCACGTGGCAGGATGCAGAGAATAGCTTCCTGAGAGTGAAGgcaagtagtagagtctgtcgcatcgcatccgtcctagcctgcgcggctaaggccttgttcgtttctatcggattggtaggccggaacgattcctatccgg...
species | Zea mays |
transcript | GRMZM2G006130_T02 |
intron # | 16 |
splice site | 5' |
intron type | U2 |
EST: CGTCTGCGATCACGTGGCAGGATGCAGAGAATAGCTTCCTGAGAGTGAAG GTCGTGAACTTCGGGTCGGACCCCGTTAACCTCACGGTCTCCACGAGCGGAEST: gi|4152199|gb|AI372333.1|AI372333
genomic: CGTCTGCGATCACGTGGCAGGATGCAGAGAATAGCTTCCTGAGAGTGAAGgcaagtagta ... tgctgtgcagGTCGTGAACTTCGGGTCGGACACCGTTAACCTCACGGTCTCCACGAGCGGA
EST: CGTCTGCGATCACGTGGCAGGATGCAGAGAATAGCTTCCTGAGAGTGAAG GTCGTGAACTTCGGGTCGGACACCGTTAGCCTCACGGTCTCCACGAGCGGGEST: gi|211146564|gb|FL325013.1|FL325013
genomic: CGTCTGCGATCACGTGGCAGGATGCAGAGAATAGCTTCCTGAGAGTGAAGgcaagtagta ... tgctgtgcagGTCGTGAACTTCGGGTCGGACACCGTTAACCTCACGGTCTCCACGAGCGGA
EST: CGTCTGCGATCACGTGGCAGGATGCAGAGAATAGCTTCCTGAGAGTGAAG GTCGKGAACTTCGGGTCGGACACCGTTAACCTCACGGTCTCCACGAGCGGA
genomic: CGTCTGCGATCACGTGGCAGGATGCAGAGAATAGCTTCCTGAGAGTGAAGgcaagtagta ... tgctgtgcagGTCGTGAACTTCGGGTCGGACACCGTTAACCTCACGGTCTCCACGAGCGGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CATGATCCATCCGGTTAATATCAGTTCCCGGTACTCGAGTTCGCTGGCCGCGTCTGCGATCACGTGGCAGGATGCAGAGAATAGCTTCCTGAGAGTGAAGgcaagtagtagagtctgtcgcatcgcatccgtcctagcctgcgcggctaaggccttgttcgtttctatcggattggtaggccggaacgattcctatccgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG