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GTCAGCTTTCGAAGAGGAACTTGATAGCATCTTTGATGTCACTCAGCTGCGCCAGTCACTTGGGCAGAAGAAGCGCGAGCTGGAGATCGAACTGAAGCGGgtacgcctctctatctatagtactctattaaaaacctaatgtgggcactgatgctaccacgactttactctctgtgttgacactctggacccaccccaac...
species | Zea mays |
transcript | GRMZM2G005848_T01 |
intron # | 16 |
splice site | 5' |
intron type | U2 |
EST: CCCAGTCACTTGGGCAGAAGAAGCGCGAGCTGGAGATCGAACTGAAGCGG ATCAAGCGCTTAAAGGAAAAGTTTGGAGAGATAAATAAGAAGCTCAATTCTEST: gi|78089725|gb|DV518099.1|DV518099
genomic: GCCAGTCACTTGGGCAGAAGAAGCGCGAGCTGGAGATCGAACTGAAGCGGgtacgcctct ... ctgggttcagATCAAGCGCTTAAAGGAAAAGTTTGGAGAGATAAATAAGAAGCTCAATTCT
EST: GCCAGTCACTTGGGCAGAAGAAGCGCGAGCTGGAGATCGAACTGAAGCGG ATCAAGCGCTTAAAGGAAAAGTTTGGAGAGATAAATAAGAAGCTCAATTCTEST: gi|74034811|gb|DT535302.1|DT535302
genomic: GCCAGTCACTTGGGCAGAAGAAGCGCGAGCTGGAGATCGAACTGAAGCGGgtacgcctct ... ctgggttcagATCAAGCGCTTAAAGGAAAAGTTTGGAGAGATAAATAAGAAGCTCAATTCT
EST: GCCAGTCACTTGGGCAGAAGAAGCGCGAGCTGGAGATCGAACTGAAGCGG ATCAAGCGCTTAAAGGAAAAGTTTGGGGAGATAAATAAGAAGCTCAATTCTEST: gi|60348324|gb|DN215297.1|DN215297
genomic: GCCAGTCACTTGGGCAGAAGAAGCGCGAGCTGGAGATCGAACTGAAGCGGgtacgcctct ... ctgggttcagATCAAGCGCTTAAAGGAAAAGTTTGGAGAGATAAATAAGAAGCTCAATTCT
EST: GCCAGTCACTTGGGCAGAAGAAGCGCGAGCTGGAGATCGAACTGAAGCGG ATCAAGCGCTTAAAGGAAAAGTTTGGAGAGATAAATAAGAAGCTCAATTCTEST: gi|18172478|gb|BM347866.1|BM347866
genomic: GCCAGTCACTTGGGCAGAAGAAGCGCGAGCTGGAGATCGAACTGAAGCGGgtacgcctct ... ctgggttcagATCAAGCGCTTAAAGGAAAAGTTTGGAGAGATAAATAAGAAGCTCAATTCT
EST: GCCAGTCACTTGGGCAGAAGAAGCGCGAGCTGGAGATCGAACTGAAGCGG ATCAAGCGCTTAAAGGAAAAGTTTGGAGAGATAAATAAGAAGCTCAATTCTEST: gi|71762146|gb|DR960083.1|DR960083
genomic: GCCAGTCACTTGGGCAGAAGAAGCGCGAGCTGGAGATCGAACTGAAGCGGgtacgcctct ... ctgggttcagATCAAGCGCTTAAAGGAAAAGTTTGGAGAGATAAATAAGAAGCTCAATTCT
EST: GCCAGTCCCTTGGGCAGAAGAAGCGCGAGCTGGAGATCGAACTGAAGCGG ATCAAGCGCTTAAAGGAAAAGTTTGGAGAGATAAATAAGAAGCTCAANNNNEST: gi|6012352|gb|AW061708.1|AW061708
genomic: GCCAGTCACTTGGGCAGAAGAAGCGCGAGCTGGAGATCGAACTGAAGCGGgtacgcctct ... ctgggttcagATCAAGCGCTTAAAGGAAAAGTTTGGAGAGATAAATAAGAAGCTCAATTCT
EST: GCCAGTCACTTGGGCAGAAGAAGCGCGAGCTGGAGATCGAACTGAAGCGG ATCAAGCGCTTAAAGGAAAAGTTTGGAGAGATAAATAAGAAGCTCAATTCTEST: gi|71771944|gb|DR969881.1|DR969881
genomic: GCCAGTCACTTGGGCAGAAGAAGCGCGAGCTGGAGATCGAACTGAAGCGGgtacgcctct ... ctgggttcagATCAAGCGCTTAAAGGAAAAGTTTGGAGAGATAAATAAGAAGCTCAATTCT
EST: GCCAGTCACTTGGGCAGAAGAAGCGCGAGCTGGAGATCGAACTGAAGCGG ATCAAGCGCTTAAAGGAAAAGTTTGGAGAGATAAATAAGAAGCTCAATTCTEST: gi|37393835|gb|CF634184.1|CF634184
genomic: GCCAGTCACTTGGGCAGAAGAAGCGCGAGCTGGAGATCGAACTGAAGCGGgtacgcctct ... ctgggttcagATCAAGCGCTTAAAGGAAAAGTTTGGAGAGATAAATAAGAAGCTCAATTCT
EST: GCCAGTCACTTGGGCAGAAGAAGCGCGAGCTGGAGATCGAACTGAAGCGG GTCAAGCGCTTAAAGGAAAAGTTTGGAGAGATAAATAAGAAGCTCAATTCTEST: gi|67021034|gb|CO449783.1|CO449783
genomic: GCCAGTCACTTGGGCAGAAGAAGCGCGAGCTGGAGATCGAACTGAAGCGGgtacgcctct ... ctgggttcagATCAAGCGCTTAAAGGAAAAGTTTGGAGAGATAAATAAGAAGCTCAATTCT
EST: GCCAGTCACTTGGGCAGAAGAAGCGCGAGCTGGAGATCGAACTGAAGCGG ATCAAGCGCTTAAAGGAAAAGTTTGGAGAGATAAATAAGAAGCTCAATTCT
genomic: GCCAGTCACTTGGGCAGAAGAAGCGCGAGCTGGAGATCGAACTGAAGCGGgtacgcctct ... ctgggttcagATCAAGCGCTTAAAGGAAAAGTTTGGAGAGATAAATAAGAAGCTCAATTCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTCAGCTTTCGAAGAGGAACTTGATAGCATCTTTGATGTCACTCAGCTGCGCCAGTCACTTGGGCAGAAGAAGCGCGAGCTGGAGATCGAACTGAAGCGGgtacgcctctctatctatagtactctattaaaaacctaatgtgggcactgatgctaccacgactttactctctgtgttgacactctggacccaccccaac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cccaccc