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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCATGCTTCTATGTCCCACCTTCACTTCGCTTCAAATCTACTGGATATGCATCAACGCCACCATCAGgtacctcaatattcttgagatctgcactcaatcgccacattcttttccgttatacttgttgaacaagttcacataatggatctctatttctgtag

Basic information

species Zea mays
transcript GRMZM5G864414_T02
intron # 15
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|32837059|gb|CD976737.1|CD976737
EST:     ACCTTCACTTCGCTTCAAATCTACTGGATATGCATCAACGCCACCATCAG                         CTGGGGCTAAAGGAGCTGTTGATCAGAAGAACATTAGGAGATACTACATGG
genomic: ACCTTCACTTCGCTTCAAATCTACTGGATATGCATCAACGCCACCATCAGgtacctcaat ... atttctgtagCTGGGGCTAAAGGAGCTGTTGATCAGAAGAACATTAGGAGATACTACATGG
EST: gi|13198636|gb|BG354438.1|BG354438
EST:     ACCTTCACTTCGCTTCAAATCTACTGGATATGCATCAACGCCACCATCAG                         CTGGGGCTAAAGGAGCTGTTGATCAGAAGAACATTAGGAGATACTACATGG
genomic: ACCTTCACTTCGCTTCAAATCTACTGGATATGCATCAACGCCACCATCAGgtacctcaat ... atttctgtagCTGGGGCTAAAGGAGCTGTTGATCAGAAGAACATTAGGAGATACTACATGG
EST: gi|13198689|gb|BG354491.1|BG354491
EST:     ACCTTCACTTCGCTTCAAATCTACTGGATATGCATCAACGCCACCATCAG                         CTGGGGCTAAAGGAGCTGTTGATCAGAAGAACATTAGGAGATACTACATGG
genomic: ACCTTCACTTCGCTTCAAATCTACTGGATATGCATCAACGCCACCATCAGgtacctcaat ... atttctgtagCTGGGGCTAAAGGAGCTGTTGATCAGAAGAACATTAGGAGATACTACATGG
EST: gi|111433841|gb|EE298127.1|EE298127
EST:     ACCTTCACTTCGCTTCAAATCTACTGGATATGCATCAACGCCACCATCAG                         CTGGGGCTAAAGGAGCTGTTGATCAGAAGAACATTAGGAGATACTACATGG
genomic: ACCTTCACTTCGCTTCAAATCTACTGGATATGCATCAACGCCACCATCAGgtacctcaat ... atttctgtagCTGGGGCTAAAGGAGCTGTTGATCAGAAGAACATTAGGAGATACTACATGG
EST: gi|71448844|gb|DR829894.1|DR829894
EST:     ACCTTCACTTCGCTTCAAATCTACTGGATATGCATCAACGCCACCATCAG                         CTGGGGCTAAAGGAGCTGTTGATCAGAAGAACATTAGGAGATACTACATGG
genomic: ACCTTCACTTCGCTTCAAATCTACTGGATATGCATCAACGCCACCATCAGgtacctcaat ... atttctgtagCTGGGGCTAAAGGAGCTGTTGATCAGAAGAACATTAGGAGATACTACATGG
EST: gi|32838225|gb|CD977903.1|CD977903
EST:     ACCTTCACTTCGCAAAAAATCTACTGGATATGCATCAACGCCACCATCAG                         CTGGGGCTAAAGGAGCTGTTGATCAGAAGAACATTAGGAGATACTACATGG
genomic: ACCTTCACTTCGCTTCAAATCTACTGGATATGCATCAACGCCACCATCAGgtacctcaat ... atttctgtagCTGGGGCTAAAGGAGCTGTTGATCAGAAGAACATTAGGAGATACTACATGG
EST: gi|71417221|gb|DR803973.1|DR803973
EST:     ACCTTCACTTCGCTTCAAATCTACTGGATATGCATCAACGCCACCATCAG                         CTGGGGCTAAAGGAGCTGTTGATCAGAAGAACATTAGGAGATACTACATGG
genomic: ACCTTCACTTCGCTTCAAATCTACTGGATATGCATCAACGCCACCATCAGgtacctcaat ... atttctgtagCTGGGGCTAAAGGAGCTGTTGATCAGAAGAACATTAGGAGATACTACATGG
EST: gi|13558780|gb|BG550135.1|BG550135
EST:     TATGCATCAACGCCACCATCAG                         CTGGGGCTAAAGGAGCTGTTGATCAGAAGAACATTAGGAGATACTACATGG
genomic: TATGCATCAACGCCACCATCAGgtacctcaat ... atttctgtagCTGGGGCTAAAGGAGCTGTTGATCAGAAGAACATTAGGAGATACTACATGG