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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCGGCGAAGCAGTCGAAGTAGGGAACTTTGATCCAAAGGTTGCGACTTTCTGGATCGACTCTGgtaatcagtagtttggagtacatttcgattcctctcagttatgcttaaccatagcatgacgattccgccttgtcgtaattgtag

Basic information

species Zea mays
transcript GRMZM5G828229_T02
intron # 15
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM5G828229_T02 (Zea mays), 5'ss of exon 15
lower sequence: LOC_Os08g05570.1 (Oryza sativa), 5'ss of exon 15
TCGGCGAAGCAGTCGAAGTAGGGAACTTTGATCCAAAGGTTGCGACTTTCTGGATCGACTCTGgtaatcagtagtttggagtacatttcgattcctctcagttatgcttaaccatagcatgacgattccgccttgtcgtaat-tgtag
| |||||| || | ||||| || | |||||| |||||| |||| || |||||||| |||||||||||||||| || |      | |   |  || |   | |     ||   |||   || ||   |  ||||| | ||| | || ||
TTGGCGAAACAATTGAAGTGGGAAGCTTTGAACCAAAGATTGCTACCTTCTGGATTGACTCTGgtaatcagttgtctttcactc-tagagtatctttgtactctcatttgcacatcttattac--ctttgccttcttgtactgtgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|113665703|gb|DW828711.1|DW828711
EST:     AACTTTGATCCAAAGGTTGCGACTTTCTGGATCGACTCTG                         ATAGCCGGCTGAAGGGTGTTTTCCTCGAGAGTGGAACCTCAGAG
genomic: AACTTTGATCCAAAGGTTGCGACTTTCTGGATCGACTCTGgtaatcagta ... gtaattgtagATAGCCGGCTGAAGGGTGTTTTCCTCGAGAGTGGAACCTCAGAG
EST: gi|211009192|gb|FL302293.1|FL302293
EST:     CGAAGTAGGGAACTTTGATCCAAAGGTTGCGACTTTCTGGATCGACTCTG                         ATAGCCGGCTGAAGGGTGTTTTCCTCGAGAGTGGAACCTCAGAG
genomic: CGAAGTAGGGAACTTTGATCCAAAGGTTGCGACTTTCTGGATCGACTCTGgtaatcagta ... gtaattgtagATAGCCGGCTGAAGGGTGTTTTCCTCGAGAGTGGAACCTCAGAG
EST: gi|86466009|gb|DY232382.1|DY232382
EST:     CGAAGTAGGGAACTTTGATCCAAAGGTTGCGACTTTCTGGATCGACTCTG                         ATAGCCGGCTGAAGGGTGTTTTCCTCGAGAGTGGAACCTCAGAG
genomic: CGAAGTAGGGAACTTTGATCCAAAGGTTGCGACTTTCTGGATCGACTCTGgtaatcagta ... gtaattgtagATAGCCGGCTGAAGGGTGTTTTCCTCGAGAGTGGAACCTCAGAG
EST: gi|86471329|gb|DY237699.1|DY237699
EST:     CGAAGTAGGGAACTTTGATCCAAAGGTTGCGACTTTCTGGATCGACTCTG                         ATAGCCGGCTGAAGGGTGTTTTCCTCGAGAGTGGAACCTCAGAG
genomic: CGAAGTAGGGAACTTTGATCCAAAGGTTGCGACTTTCTGGATCGACTCTGgtaatcagta ... gtaattgtagATAGCCGGCTGAAGGGTGTTTTCCTCGAGAGTGGAACCTCAGAG
EST: gi|60340056|gb|DN207029.1|DN207029
EST:     CGAAGTAGGGAACTTTGATCCAAAGGTTGCGACTTTCTGGATCGACTCTG                         ATAGCCGGCTGAAGGGTGTTTTCCTCGAGAGTGGAACCTCAGAG
genomic: CGAAGTAGGGAACTTTGATCCAAAGGTTGCGACTTTCTGGATCGACTCTGgtaatcagta ... gtaattgtagATAGCCGGCTGAAGGGTGTTTTCCTCGAGAGTGGAACCTCAGAG
EST: gi|87152588|gb|DY397377.1|DY397377
EST:     CGAAGTAGGGAACTTTGATCCAAAGGTTGCGACTTTCTGGATCGACTCTG                         ATAGCCGGCTGAAGGGTGTTTTCCTCGAGAGTGGAACCTCAGAG
genomic: CGAAGTAGGGAACTTTGATCCAAAGGTTGCGACTTTCTGGATCGACTCTGgtaatcagta ... gtaattgtagATAGCCGGCTGAAGGGTGTTTTCCTCGAGAGTGGAACCTCAGAG
EST: gi|60342475|gb|DN209448.1|DN209448
EST:     CGAAGTAGGGAACTTTGATCCAAAGGTTGCGACTTTCTGGATCGACTCTG                         ATAGCCGGCTGAAGGGTGTTTTCCTCGAGAGTGGAACCTCAGAG
genomic: CGAAGTAGGGAACTTTGATCCAAAGGTTGCGACTTTCTGGATCGACTCTGgtaatcagta ... gtaattgtagATAGCCGGCTGAAGGGTGTTTTCCTCGAGAGTGGAACCTCAGAG
EST: gi|18655110|gb|BM499915.1|BM499915
EST:     CG-AGTAGGGAACTTTGATCCAAAGGTTGCGACTTTCTGGATCGACTCTG                         ATAGCCGGCTGAAGGGTGTTTTCCTCGAGAGTGGAACCTCAGAG
genomic: CGAAGTAGGGAACTTTGATCCAAAGGTTGCGACTTTCTGGATCGACTCTGgtaatcagta ... gtaattgtagATAGCCGGCTGAAGGGTGTTTTCCTCGAGAGTGGAACCTCAGAG
EST: gi|211009193|gb|FL302294.1|FL302294
EST:     CGAAGTAGGGAACTYTGATCCAAAGGTTGCGACTTTCTGGATCGACTCTG                         ATAGCCGGCTGAAGGGTGTTTTCCTCGAGAGTGGAACCTCAGAG
genomic: CGAAGTAGGGAACTTTGATCCAAAGGTTGCGACTTTCTGGATCGACTCTGgtaatcagta ... gtaattgtagATAGCCGGCTGAAGGGTGTTTTCCTCGAGAGTGGAACCTCAGAG
EST: gi|211410389|gb|FL480482.1|FL480482
EST:     CGAAGTAGGGAACTTTGATCCAAAGGTTGCGACTTTCTGGATCGACTCTG                         ATAGCCGGCTGAAGGGTGTTTTCCTCGAGAGTGGAACCTCAGAG
genomic: CGAAGTAGGGAACTTTGATCCAAAGGTTGCGACTTTCTGGATCGACTCTGgtaatcagta ... gtaattgtagATAGCCGGCTGAAGGGTGTTTTCCTCGAGAGTGGAACCTCAGAG
EST: gi|110943981|gb|EE164138.1|EE164138
EST:     CGAAGTAGGGAACTTTGATCCAAAGGTTGCGACTTTCTGGATCGACTTTG                         ATAGCCGGCTGAAGGGTGTTTTCCTCGAGAGTGGAACCTCAGAG
genomic: CGAAGTAGGGAACTTTGATCCAAAGGTTGCGACTTTCTGGATCGACTCTGgtaatcagta ... gtaattgtagATAGCCGGCTGAAGGGTGTTTTCCTCGAGAGTGGAACCTCAGAG
EST: gi|86467590|gb|DY233960.1|DY233960
EST:     CGAAGTAGGGAACTTTGATCCAAAGGTTGCGACTTTCTGGATCGACTTTG                         ATAGCCGGCTGAAGGGTGTTTTCCTCGAGAGTGGAACCTCAGAG
genomic: CGAAGTAGGGAACTTTGATCCAAAGGTTGCGACTTTCTGGATCGACTCTGgtaatcagta ... gtaattgtagATAGCCGGCTGAAGGGTGTTTTCCTCGAGAGTGGAACCTCAGAG
EST: gi|32848350|gb|CD988031.1|CD988031
EST:     CGAAGTAGGGAACTTTGATCCAAAGGTTGCGACTTTCTGGATCGACTCTG                         ATAGCCGGCTGAAGGGTGTTTTCCTCGAGAGTGGAACCTCAGAG
genomic: CGAAGTAGGGAACTTTGATCCAAAGGTTGCGACTTTCTGGATCGACTCTGgtaatcagta ... gtaattgtagATAGCCGGCTGAAGGGTGTTTTCCTCGAGAGTGGAACCTCAGAG
EST: gi|40303824|gb|CK348211.1|CK348211
EST:     CGAAGTAGGGAACTTTGATCCAAAGGTTGCGACTTTCTGGATCGACTCTG                         ATAGCCGGCTGAAGGGTGTTTTCCTCGAGAGTGGAACCTCAGAG
genomic: CGAAGTAGGGAACTTTGATCCAAAGGTTGCGACTTTCTGGATCGACTCTGgtaatcagta ... gtaattgtagATAGCCGGCTGAAGGGTGTTTTCCTCGAGAGTGGAACCTCAGAG
EST: gi|148929039|gb|EC874295.2|EC874295
EST:     CGAAGTAGGGAACTTTGATCCAAAGGTTGCGACTTTCTGGATCGACTCTG                         ATAGCCGGCTGAAGGGTGTTTTCCTCGAGAGTGGAACCTCAGAG
genomic: CGAAGTAGGGAACTTTGATCCAAAGGTTGCGACTTTCTGGATCGACTCTGgtaatcagta ... gtaattgtagATAGCCGGCTGAAGGGTGTTTTCCTCGAGAGTGGAACCTCAGAG
EST: gi|211520540|gb|FL475907.1|FL475907
EST:     CGAAGTAGGGAACTTTGATCCAAAGGTTGCGACTTTCTGGATCGACTCTG                         ATAGCCGGCTGAAGGGTGTTTTGGTCGAGAGTGGAACCTCAGAG
genomic: CGAAGTAGGGAACTTTGATCCAAAGGTTGCGACTTTCTGGATCGACTCTGgtaatcagta ... gtaattgtagATAGCCGGCTGAAGGGTGTTTTCCTCGAGAGTGGAACCTCAGAG
EST: gi|71760295|gb|DR958232.1|DR958232
EST:     CGAAGTAGGGAACTCTGATCCAAAGGTTGGGACTTTCTGGATCGACTTTG                         ATAGCCGGCTGAAGGGTGTTTTCCTCGAGAGTGGAACCTCAGAG
genomic: CGAAGTAGGGAACTTTGATCCAAAGGTTGCGACTTTCTGGATCGACTCTGgtaatcagta ... gtaattgtagATAGCCGGCTGAAGGGTGTTTTCCTCGAGAGTGGAACCTCAGAG
EST: gi|22490231|gb|BU050154.1|BU050154
EST:     CGAAGTAGGGAACTTTGATCCAAAGGTTGCGACTTTCTGGATCGACTCTG                         ATAGCCGGCTGAAGGGTGTTTTCCTCGAGAGTGGAACCTCAGAG
genomic: CGAAGTAGGGAACTTTGATCCAAAGGTTGCGACTTTCTGGATCGACTCTGgtaatcagta ... gtaattgtagATAGCCGGCTGAAGGGTGTTTTCCTCGAGAGTGGAACCTCAGAG
EST: gi|148990926|gb|EE032349.2|EE032349
EST:     CGAAGTAGGGAACTTTGATCCAAAGGTTGCGACTTTCTGGATCGACTCTG                         ATAGCCGGCTGAAGGGTGTTTTCCTCGAGAGTGGAACCTCAGAG
genomic: CGAAGTAGGGAACTTTGATCCAAAGGTTGCGACTTTCTGGATCGACTCTGgtaatcagta ... gtaattgtagATAGCCGGCTGAAGGGTGTTTTCCTCGAGAGTGGAACCTCAGAG
EST: gi|78103955|gb|DV522373.1|DV522373
EST:     CGAAGTAGGGAACTTTGATCCAAAGGTTGCGACTTTCTGGATCGACTCTG                         ATAGCCGGCTGAAGGGTGTTTTCCTCGAGAGTGGAACCTCAGAG
genomic: CGAAGTAGGGAACTTTGATCCAAAGGTTGCGACTTTCTGGATCGACTCTGgtaatcagta ... gtaattgtagATAGCCGGCTGAAGGGTGTTTTCCTCGAGAGTGGAACCTCAGAG
EST: gi|87153578|gb|DY398367.1|DY398367
EST:     CGAAGTAGGGAACTTTGATCCAAAGGTTGCGACTTTCTGGATCGACTCTG                         ATAGCCGGCTGAAGGGTGTTTTCCTCGAGAGTGGAACCTCAGAG
genomic: CGAAGTAGGGAACTTTGATCCAAAGGTTGCGACTTTCTGGATCGACTCTGgtaatcagta ... gtaattgtagATAGCCGGCTGAAGGGTGTTTTCCTCGAGAGTGGAACCTCAGAG
EST: gi|5510847|gb|AI857231.1|AI857231
EST:     CGAAGTAGGGAACTTTGATCC-AAGGTTGCGACTTTCTGGATCGACTCTG                         ATAGCCGGCTGAAGGGTGTTTTCCTCGAGAGTGGAACCTCAGAG
genomic: CGAAGTAGGGAACTTTGATCCAAAGGTTGCGACTTTCTGGATCGACTCTGgtaatcagta ... gtaattgtagATAGCCGGCTGAAGGGTGTTTTCCTCGAGAGTGGAACCTCAGAG
EST: gi|4572936|gb|AI586585.1|AI586585
EST:     TTTGATCCAAAGGTTGCGACTTTCTGGATCGACTCTG                         ATAGCCGGCTGAAGGGTGTTTTCCTCGAGAGTGGAACCTCAGAG
genomic: TTTGATCCAAAGGTTGCGACTTTCTGGATCGACTCTGgtaatcagta ... gtaattgtagATAGCCGGCTGAAGGGTGTTTTCCTCGAGAGTGGAACCTCAGAG
EST: gi|60341998|gb|DN208971.1|DN208971
EST:     CGAAGTAGGGAACTTTGATCCAAAGGTTGCGACTTTCTGGATCGACTCTG                         ATAGCCGGCTGAAGGGTGTTTTCCTCGAGAGTGGAACCTCAGAG
genomic: CGAAGTAGGGAACTTTGATCCAAAGGTTGCGACTTTCTGGATCGACTCTGgtaatcagta ... gtaattgtagATAGCCGGCTGAAGGGTGTTTTCCTCGAGAGTGGAACCTCAGAG
EST: gi|33101850|gb|CF061810.1|CF061810
EST:     CGAAGTAGGGAACTTTGATCTAAAGGTTGCGACTTTCTGGATCGACTCTG                         ATAGCCGGCTGAAGGGTGTTTTCCTCGAGAGTGGAACCTCAGAG
genomic: CGAAGTAGGGAACTTTGATCCAAAGGTTGCGACTTTCTGGATCGACTCTGgtaatcagta ... gtaattgtagATAGCCGGCTGAAGGGTGTTTTCCTCGAGAGTGGAACCTCAGAG
EST: gi|148933345|gb|EC877007.2|EC877007
EST:     CGAAGTAGGGAACTTTGATCCAAAGGTTGCGACTTTCTGGATCGACTCTG                         ATAGCCGGCTGAAGGGTGTTTTCCTCGAGAGTGGAACCTCAGAG
genomic: CGAAGTAGGGAACTTTGATCCAAAGGTTGCGACTTTCTGGATCGACTCTGgtaatcagta ... gtaattgtagATAGCCGGCTGAAGGGTGTTTTCCTCGAGAGTGGAACCTCAGAG
EST: gi|33102180|gb|CF062140.1|CF062140
EST:     CGAAGTAGGGAACTTTGATCTAAAGGTTGCGACTTTCTGGATCGACTCTG                         ATAGCCGGCTGAAGGGTGTTTTCCTCGAGAGTGGAACCTCAGAG
genomic: CGAAGTAGGGAACTTTGATCCAAAGGTTGCGACTTTCTGGATCGACTCTGgtaatcagta ... gtaattgtagATAGCCGGCTGAAGGGTGTTTTCCTCGAGAGTGGAACCTCAGAG
EST: gi|33090861|gb|CF050855.1|CF050855
EST:     CGAAGTAGGGAACTTTGATCCAAAGGTTGCGACTTTCTGGATCGACTCTG                         ATAGCCGGCTGAAGGGTGTTTTCCTCGAGAGTGGAACCTCAGAG
genomic: CGAAGTAGGGAACTTTGATCCAAAGGTTGCGACTTTCTGGATCGACTCTGgtaatcagta ... gtaattgtagATAGCCGGCTGAAGGGTGTTTTCCTCGAGAGTGGAACCTCAGAG
EST: gi|32831851|gb|CD971529.1|CD971529
EST:     GAAGTAGGGAACCTTTGATCCAAAGGTTGCGACTTTCTGGATCGACTCTG                         ATAGCCGGCTGAAGGGTGTTTTCCTCGAGAGTGGAACCTCAGAG
genomic: GAAGTAGGGAA-CTTTGATCCAAAGGTTGCGACTTTCTGGATCGACTCTGgtaatcagta ... gtaattgtagATAGCCGGCTGAAGGGTGTTTTCCTCGAGAGTGGAACCTCAGAG
EST: gi|60355749|gb|DN222722.1|DN222722
EST:     CGAAGTAGGGAACTTTGATCCAAAGGTTGCGACTTTCTGGATCGACTCTG                         ATAGCCGGCTGAAGGGTGTTTTCCTCGAGAGTGGAACCTCAGAG
genomic: CGAAGTAGGGAACTTTGATCCAAAGGTTGCGACTTTCTGGATCGACTCTGgtaatcagta ... gtaattgtagATAGCCGGCTGAAGGGTGTTTTCCTCGAGAGTGGAACCTCAGAG
EST: gi|14190977|gb|BG833207.1|BG833207
EST:     CGAAGTAGGGAACTTTGATCCAAAGGTTGCGACTTTCTGGATCGACTCTG                         ATAGCCGGCTGAAGGGTGTTTTCCTCGAGAGTGGAACCTCAGAG
genomic: CGAAGTAGGGAACTTTGATCCAAAGGTTGCGACTTTCTGGATCGACTCTGgtaatcagta ... gtaattgtagATAGCCGGCTGAAGGGTGTTTTCCTCGAGAGTGGAACCTCAGAG