1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
TGAGGCCGGTGAGCTTTATTCAAGGAAGCTTGCGAGCTTTGTGGAGAAGCGACTGAAATCCGAGCGGACTGCCTCTgtaagtatgccatttgcttctctattcagtgaaggggaaatatcattaaatttatgtgcaacgatgatttcag
species | Zea mays |
transcript | GRMZM5G824405_T02 |
intron # | 15 |
splice site | 5' |
intron type | U2 |
EST: AGCTTGCGAGCTTTGTGGAGAAGCGACTGAAATCCGAGCGGACTGCCTCT ATATGGACTAGCACACTCCAGAGAACAATATTAACAGCACATCCGATCATTEST: gi|211189269|gb|FL030572.1|FL030572
genomic: AGCTTGCGAGCTTTGTGGAGAAGCGACTGAAATCCGAGCGGACTGCCTCTgtaagtatgc ... atgatttcagATATGGACTAGCACACTCCAGAGAACAATATTAACAGCACATCCGATCATT
EST: AGCTTGCGAGCTTTGTGGAGAAGCGACTGAAATCCGAGCGGACTGCCTCT ATATGGACTAGCACACTCCAGAGAACAATATTAACAGCACATCCGATCATTEST: gi|67015674|gb|CO444423.1|CO444423
genomic: AGCTTGCGAGCTTTGTGGAGAAGCGACTGAAATCCGAGCGGACTGCCTCTgtaagtatgc ... atgatttcagATATGGACTAGCACACTCCAGAGAACAATATTAACAGCACATCCGATCATT
EST: AGCTTGCGAGCTTTGTGGAGAAGCGACTGAAATCCGAGCGGACTGCCTCT ATATGGACTAGCACACTCCAGAGAACAATATTAACAGCACATCCGATCATTEST: gi|67010650|gb|CO439399.1|CO439399
genomic: AGCTTGCGAGCTTTGTGGAGAAGCGACTGAAATCCGAGCGGACTGCCTCTgtaagtatgc ... atgatttcagATATGGACTAGCACACTCCAGAGAACAATATTAACAGCACATCCGATCATT
EST: AGCTTGCGAGCTTTGTGGAGAAGCGACTGAAATCCGAGCGGACTGCCTCT ATATGGACTAGCACACTCCAGAGAACAATATTAACAGCACATCCGATCATT
genomic: AGCTTGCGAGCTTTGTGGAGAAGCGACTGAAATCCGAGCGGACTGCCTCTgtaagtatgc ... atgatttcagATATGGACTAGCACACTCCAGAGAACAATATTAACAGCACATCCGATCATT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGAGGCCGGTGAGCTTTATTCAAGGAAGCTTGCGAGCTTTGTGGAGAAGCGACTGAAATCCGAGCGGACTGCCTCTgtaagtatgccatttgcttctctattcagtgaaggggaaatatcattaaatttatgtgcaacgatgatttcag
- - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - AGAAGC