Sequence
atgc intronic sequence ATGC exonic sequenceGATTGATAGAAAGAAGAATATTTTCAAGCTTTCGCAGGGGGAATACGTTGCAGTGGAAAATCTAGAGAATGTGTATGGTGTTCTTCAAGATATAGATTCGgtatgtaacaaactcactggaaaatgcacggtcttaactttttttccccatgttgcaacagaattttttatattcgtttcacccatgcttaaggtgcttg...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM5G812228_T01 (Zea mays), 5'ss of exon 11
lower sequence: LOC_Os06g06350.2 (Oryza sativa), 5'ss of exon 11
GATTGATAGAAAGAAGAATATTTTCAAGCTTTCGCAGGGGGAATACGTTGCAGTGGAAAATCTAGAGAATGTGTATGGTGTTCTTCAAGATATAGATTCGgtatgtaacaaactcactggaaaat--------gcacggtcttaactttttttccccatgttgcaacagaattttttatattcgtttcacccatgcttaaggtgcttg
||||| || ||||| ||||| ||||||||||| ||||| ||||| |||||||| |||||||| ||||||||||| || ||||| ||||| |||||||||||| || | ||| ||| | | | | |||| || |||| | | || | ||||| | || | | || |
CATTGACAGGAAGAAAAATATATTCAAGCTTTCACAGGGAGAATATGTTGCAGTAGAAAATCTCGAGAATGTGTACGGGGTTCTCCAAGAGATAGATTCGgtaactactatactaactactcactttttcaggggatcgtctcaaattttatgtttctatctgatatgagcctttttttccctattatatttcc-catatg-------
upper sequence: GRMZM5G812228_T01 (Zea mays), 5'ss of exon 11
lower sequence: PP1S108_163V6.1 (Physcomitrella patens), 5'ss of exon 16
GATTGATAGAAAGAAGAATATTTTCAAGCTTTCGCAGGGGGAATACGTTGCAGTGGAAAATCTAGAGAATGTGTATGGTGTTCTTCAAGATATAGATTCGgtatgtaacaaactcactggaaaatgcacggtcttaactttttttccccatgttgcaacagaatttttta--tattcgtttcacccatgcttaaggtgcttg----
||||| | ||||||||||||||||||||||| ||||| ||||| ||||||| ||||| || || |||||||| | | | | | ||| ||||| | ||| || | || | | | ||| | | | || | ||| || ||||| | | ||||| || | | | || |
TATTGACCGTAAGAAGAATATTTTCAAGCTTTCTCAGGGAGAATATATTGCAGTCGAAAAGCTGGAAAATGTGTACAATCAGTCTGCTGCTGTGGATGCGgtacatgcttaac---ctcaatgattctgg---tgaacatcagtaactgatttctcaaaagcattttcgagttgctcgttgcatcgttttggcacgttttccatcc
upper sequence: GRMZM5G812228_T01 (Zea mays), 5'ss of exon 11
lower sequence: PP1S47_161V6.1 (Physcomitrella patens), 5'ss of exon 16
GATTGATAGAAAGAAGAATATTTTCAAGCTTTCGCAGGGGGAATACGTTGCAGTGGAAAATCTAGAGAATGTGTATGGTGTTCTTCAAGATATAGATTCGgtatgtaacaaactcactggaaaatgc-acggtcttaactttttttccccatgttgcaacagaattttttata---ttcgtttcacccatgcttaaggtgcttg---
|||||| | |||||||| || ||||||||||| || || |||||||||||||| ||||| || || |||||||| || | | ||| ||||||| | || ||||| | || | | || | | | ||| || ||| | |||| | |||||| ||| || |
TATTGATCGCAAGAAGAACATCTTCAAGCTTTCTCAAGGAGAATACGTTGCAGTCGAAAACCTTGAAAATGTGTACAATGAGTCCTCCTCTGTTGATGCGgtatg-agca---tcactttacgattctgctgttcataatctagttcttgcaaccacatgcactgctttagcagatttcgatctacccatttc---ggtactaggttMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|110964187|gb|EE184087.1|EE184087EST: CAGTGGAAAATCTAGAGAATGTGTATGGTGTTCTTCAAGATATAGATTCG ATATGGGTATACGGGAACAGCTTCGAATTTTCTTTTGTCGCCGTCGCCAAC
genomic: CAGTGGAAAATCTAGAGAATGTGTATGGTGTTCTTCAAGATATAGATTCGgtatgtaaca ... tctatttcagATATGGGTATACGGGAACAGCTTCGAATCTTCTCTCGTCGCCGTCGCCAAC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GATTGATAGAAAGAAGAATATTTTCAAGCTTTCGCAGGGGGAATACGTTGCAGTGGAAAATCTAGAGAATGTGTATGGTGTTCTTCAAGATATAGATTCGgtatgtaacaaactcactggaaaatgcacggtcttaactttttttccccatgttgcaacagaattttttatattcgtttcacccatgcttaaggtgcttg
- - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA