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CCCGGACAGTGACAACCTCCGTATAAGAAGATACATAGCAAAATACACAATAAATCCAGCAATAGTGAATGGGTTTTCAGACTTTGTTGGTTCTGTTGAGgtatgtcttatctagttactgagaaaattctatttatctgctccttattcactgaagagctaaagtttgacaatgctatcttgtgccatgtaccttgaaa...
species | Zea mays |
transcript | GRMZM2G461569_T01 |
intron # | 15 |
splice site | 5' |
intron type | U2 |
EST: TCAGACTTTGTTGGTTCTGTTGAG GTGGGAAAATTAGCTGACCTTGTTCTTTGGAAACCATCTTTYTTCGGCGCTEST: gi|32834778|gb|CD974456.1|CD974456
genomic: TCAGACTTTGTTGGTTCTGTTGAGgtatgtctta ... tttttgacagGTGGGAAAATTAGCTGACCTTGTTCTTTGGAAACCATCTTTCTTCGGCGCT
EST: TAAATCCAGCAATAGTGAACGGGTTTTCAGACTTTGTTGGTTCTGTTGAG GTGGGAAAATTAGCTGACCTTGTTCTTTGGAAACCATCTTTCTTCGGCGCTEST: gi|32932810|gb|CF037622.1|CF037622
genomic: TAAATCCAGCAATAGTGAATGGGTTTTCAGACTTTGTTGGTTCTGTTGAGgtatgtctta ... tttttgacagGTGGGAAAATTAGCTGACCTTGTTCTTTGGAAACCATCTTTCTTCGGCGCT
EST: TAAATCCAGCAATAGTGAACGGGTTTTCAGACTTTGTTGGTTCTGTTGAG GTGGGAAAATTAGCTGACCTTGTTCTTTGGAAACCATCTTTCTTCGGCGCTEST: gi|213172274|gb|FM186421.1|FM186421
genomic: TAAATCCAGCAATAGTGAATGGGTTTTCAGACTTTGTTGGTTCTGTTGAGgtatgtctta ... tttttgacagGTGGGAAAATTAGCTGACCTTGTTCTTTGGAAACCATCTTTCTTCGGCGCT
EST: TAAATCCAGCAATAGTGAACGGGTTTTCAGACTTTGTTGGTTCTGTTGAG GTGGGAAAATTAGCTGACCTTGTTCTTTGGAAACCATCTTTCTTCGGCGCTEST: gi|213172803|gb|FM187184.1|FM187184
genomic: TAAATCCAGCAATAGTGAATGGGTTTTCAGACTTTGTTGGTTCTGTTGAGgtatgtctta ... tttttgacagGTGGGAAAATTAGCTGACCTTGTTCTTTGGAAACCATCTTTCTTCGGCGCT
EST: TAAATCCAGCAATAGTGAACGGGTTTTCAGACTTTGTTGGTTCTGTTGAG GTGGGAAAATTAGCTGACCTTGTTCTTTGGAAACCATCTTTCTTCGGCGCTEST: gi|76011931|gb|DT939101.1|DT939101
genomic: TAAATCCAGCAATAGTGAATGGGTTTTCAGACTTTGTTGGTTCTGTTGAGgtatgtctta ... tttttgacagGTGGGAAAATTAGCTGACCTTGTTCTTTGGAAACCATCTTTCTTCGGCGCT
EST: TAAATCCAGCAATAGTGAATGGGTTTTCAGACTTTGTTGGTTCTGTTGAG GTGGGAAAATTAGCTGACCTTGTTCTTTGGAAACCATCTTTCTTCGGCGCTEST: gi|31358228|gb|CD442585.1|CD442585
genomic: TAAATCCAGCAATAGTGAATGGGTTTTCAGACTTTGTTGGTTCTGTTGAGgtatgtctta ... tttttgacagGTGGGAAAATTAGCTGACCTTGTTCTTTGGAAACCATCTTTCTTCGGCGCT
EST: GCAATAGTGAACGGGTTTTCAGACTTTGTTGGTTCTGTTGAG GTGGGAAAATTAGCTGACCTTGTTCTTTGGAAACCATCTTTCTTCGGCGCTEST: gi|32834768|gb|CD974446.1|CD974446
genomic: GCAATAGTGAATGGGTTTTCAGACTTTGTTGGTTCTGTTGAGgtatgtctta ... tttttgacagGTGGGAAAATTAGCTGACCTTGTTCTTTGGAAACCATCTTTCTTCGGCGCT
EST: TAAATCCAGCAATAGTGAACGGGTTTTCAGACTTTGTTGGTTCTGTTGAG GTGGGAAAATTAGCTGACCTTGTTCTTTGGAAACCATCTTTCTTCGGCGCTEST: gi|32835420|gb|CD975098.1|CD975098
genomic: TAAATCCAGCAATAGTGAATGGGTTTTCAGACTTTGTTGGTTCTGTTGAGgtatgtctta ... tttttgacagGTGGGAAAATTAGCTGACCTTGTTCTTTGGAAACCATCTTTCTTCGGCGCT
EST: TAAATCCAGCAATAGTGAACGGGTTTTCAGACTTTGTTGGTTCTGTTGAG GTGGGAAAATTAGCTGACCTTGTTCTTTGGAAACCATCTTTCTTCGGCGCTEST: gi|213170447|gb|FM190520.1|FM190520
genomic: TAAATCCAGCAATAGTGAATGGGTTTTCAGACTTTGTTGGTTCTGTTGAGgtatgtctta ... tttttgacagGTGGGAAAATTAGCTGACCTTGTTCTTTGGAAACCATCTTTCTTCGGCGCT
EST: TAAATCCAGCAATAGTGAACGGGTTTTCAGACTTTGTTGGTTCTGTTGAG GTGGGAAAATTAGCTGACCTTGTTCTTTGGAAACCATCTTTCTTCGGCGCTEST: gi|211090509|gb|FK961026.1|FK961026
genomic: TAAATCCAGCAATAGTGAATGGGTTTTCAGACTTTGTTGGTTCTGTTGAGgtatgtctta ... tttttgacagGTGGGAAAATTAGCTGACCTTGTTCTTTGGAAACCATCTTTCTTCGGCGCT
EST: TAAATCCAGCAATAGTGAATGGGTTTTCAGACTTTGTTGGTTCTGTTGAG GTGGGAAAATTARCTGACCTTGTTCTTTGGAAACCATCTTTCTTCGGCGCTEST: gi|78085739|gb|DV514132.1|DV514132
genomic: TAAATCCAGCAATAGTGAATGGGTTTTCAGACTTTGTTGGTTCTGTTGAGgtatgtctta ... tttttgacagGTGGGAAAATTAGCTGACCTTGTTCTTTGGAAACCATCTTTCTTCGGCGCT
EST: AATCCCAGCA-TAGTGAAATGGGTTTTCAGACTTTGTTGGTTCTGTTGAG GTGGGAAAATTAGCTGACCTTGTTCTTTGGAAACCATCTTTCTT
genomic: AATCC-AGCAATAGTGAA-TGGGTTTTCAGACTTTGTTGGTTCTGTTGAGgtatgtctta ... tttttgacagGTGGGAAAATTAGCTGACCTTGTTCTTTGGAAACCATCTTTCTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CCCGGACAGTGACAACCTCCGTATAAGAAGATACATAGCAAAATACACAATAAATCCAGCAATAGTGAATGGGTTTTCAGACTTTGTTGGTTCTGTTGAGgtatgtcttatctagttactgagaaaattctatttatctgctccttattcactgaagagctaaagtttgacaatgctatcttgtgccatgtaccttgaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gagaaaat