1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' |
AGAATGATGACAGAGGAACCAGAGATATACCAACGGATGCTTCAAAGCCTCATCTCAAAAGCTCAACAGgttattcttcctcatcttatattattattaccgaggaacaatgctttgcattttatacctagaatagctcttactgacatgttgaaccacttgaagcctcctagtaggcttaattccatgtgtatcctatcacctcattaagttggtgctgacttgtttgtgttattgccag
species | Zea mays |
transcript | GRMZM2G459642_T01 |
intron # | 15 |
splice site | 5' |
intron type | U2 |
EST: AAAGCTCAACAG TGTAACAATGAGAAACTTCTGGAGAACCCATACCTTCAGATGCGTGGGATAEST: gi|60346719|gb|DN213692.1|DN213692
genomic: AAAGCTCAACAGgttattcttc ... ttattgccagTGTAACAATGAGAAACTTCTGGAGAACCCATACCTTCAGATGCGTGGGATA
EST: CAGAGATATACCAACGGATGCTTCAAAGCCTCATCTCAAAAGCTCAACAG TGTAACAATGAGAAACTTCTGGAGAACCCATACCTTCAGATGCGTGGGATAEST: gi|60401545|gb|DN234352.1|DN234352
genomic: CAGAGATATACCAACGGATGCTTCAAAGCCTCATCTCAAAAGCTCAACAGgttattcttc ... ttattgccagTGTAACAATGAGAAACTTCTGGAGAACCCATACCTTCAGATGCGTGGGATA
EST: ATCTCAAAAGCTCAACAG TGTAACAATGAGAAACTTCTGGAGAACCCATACCTTCAGATGCGTGGGATAEST: gi|211383655|gb|FL455017.1|FL455017
genomic: ATCTCAAAAGCTCAACAGgttattcttc ... ttattgccagTGTAACAATGAGAAACTTCTGGAGAACCCATACCTTCAGATGCGTGGGATA
EST: AGCCTCATCTCAAAAGCTCAACAG TGTAACAATGAGAAACTTCTGGAGAACCCATACCTTCAGATGCGTGGGATAEST: gi|60399844|gb|DN232654.1|DN232654
genomic: AGCCTCATCTCAAAAGCTCAACAGgttattcttc ... ttattgccagTGTAACAATGAGAAACTTCTGGAGAACCCATACCTTCAGATGCGTGGGATA
EST: CAGAGATATACCAACGGATGCTTCAAAGCCTCATCTCAAAAGCTCAACAG TGTAACAATGAGAAACTTCTGGAGAACCCATACCTTCAGATGCGTGGGATAEST: gi|60344784|gb|DN211757.1|DN211757
genomic: CAGAGATATACCAACGGATGCTTCAAAGCCTCATCTCAAAAGCTCAACAGgttattcttc ... ttattgccagTGTAACAATGAGAAACTTCTGGAGAACCCATACCTTCAGATGCGTGGGATA
EST: CAGAGATATACCAACGGATGCTTCAAAGCCTCATCTCAAAAGCTCAACAG TGTAACAATGAGAAACTTCTGGAGAACCCATACCTTCAGATGCGTGGGATAEST: gi|6056553|gb|AW090943.1|AW090943
genomic: CAGAGATATACCAACGGATGCTTCAAAGCCTCATCTCAAAAGCTCAACAGgttattcttc ... ttattgccagTGTAACAATGAGAAACTTCTGGAGAACCCATACCTTCAGATGCGTGGGATA
EST: CAGAGATATACCAACGGATGCTTNAAAGCCTCATCTCAAAAGCTCAACAG TGTAACAATGAGAAACTTEST: gi|33091264|gb|CF051258.1|CF051258
genomic: CAGAGATATACCAACGGATGCTTCAAAGCCTCATCTCAAAAGCTCAACAGgttattcttc ... ttattgccagTGTAACAATGAGAAACTT
EST: CAGAGATATACCAACGGATGCTTCAAAGCCTCATCTCAAAAGCTCAACAG TGTAACAATGAGAAACTTCTGGAGAACCCATACCTTCAGATGCGTGGGATA
genomic: CAGAGATATACCAACGGATGCTTCAAAGCCTCATCTCAAAAGCTCAACAGgttattcttc ... ttattgccagTGTAACAATGAGAAACTTCTGGAGAACCCATACCTTCAGATGCGTGGGATA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGAATGATGACAGAGGAACCAGAGATATACCAACGGATGCTTCAAAGCCTCATCTCAAAAGCTCAACAGgttattcttcctcatcttatattattattaccgaggaacaatgctttgcattttatacctagaatagctcttactgacatgttgaaccacttgaagcctcctagtaggcttaattccatgtgtatcctatcacctcattaagttggtgctgacttgtttgtgttattgccag
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