Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCCTCATGGCTTAGCTGAGGGATGGAAATGGCTCGCCATGTTCCTCAATTCTCTTCCAGCTACTACAGCCACTGCTTGTGCCCTTCACGCCTTCCTCAAGgtaggaatctgcttcaagacctcctgtttgcgtgccattagttaatcggggttcttatgcttttcag

Basic information

species Zea mays
transcript GRMZM2G417217_T02
intron # 15
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G417217_T03 (Zea mays), 5'ss of exon 13
lower sequence: LOC_Os02g38250.1 (Oryza sativa), 5'ss of exon 14
TCCTCATGGCTTAGCTGAGGGATGGAAATGGCTCGCCATGTTCCTCAATTCTCTTCCAGCTACTACAGCCACTGCTTGTGCCCTTCACGCCTTCCTCAAGgtaggaatctgcttcaagacctcc---------------tgtttgcgtgccat----------tagttaatcggggttcttatgcttttcag
||| ||||||||||||||||| ||||||||||| ||||||||||| ||| |||| || || || ||||| ||||||||||||||||| || ||||||||||||  ||| |||||||||||| ||               ||| ||| ||              |||  ||   || ||||  | || |||||
TCCACATGGCTTAGCTGAGGGGTGGAAATGGCTTGCCATGTTCCTTAATACTCTCCCGGCCACCACAGCAACTGCTTGTGCCCTTCATGCTTTCCTCAAGgtaaaaatatgcttcaagacccccatcccctcctatgcgtgtgtgcttgtagcaggtttgttgtagccaacttggattctgtttctgttcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|31355428|gb|CD439785.1|CD439785
EST:     CTCTTCCAGCTACTACAGCCACTGCTTGTGCCCTTCACGCCTTCCTCAAG                         ATGGCTGGTTTTGCACTTCACAAGAAATATGGATCGCAGTTCATGAAAATC
genomic: CTCTTCCAGCTACTACAGCCACTGCTTGTGCCCTTCACGCCTTCCTCAAGgtaggaatct ... tgcttttcagATGGCTGGTTTTGCACTTCACAAGAAATATGGATCGCAGTTCATGAAAATC
EST: gi|67016820|gb|CO445569.1|CO445569
EST:     AGCCACTGTTTGTGCCCTTCACGCCTTCCTCAAG                         A-GGCTGGTTTTGCACTTCACAAGAAATATGGATCGCAGTTCATGAAAATC
genomic: AGCCACTGCTTGTGCCCTTCACGCCTTCCTCAAGgtaggaatct ... tgcttttcagATGGCTGGTTTTGCACTTCACAAGAAATATGGATCGCAGTTCATGAAAATC
EST: gi|24769979|gb|CA405108.1|CA405108
EST:     CTCTTCCAGCTACTACAGCCACTGCTTGTGCCCTTCACGCCTTCCTCAAG                         ATGGCTGGTTTTGCACTTCACAAGAAATATGGATCGCAGTTCATGAAAATC
genomic: CTCTTCCAGCTACTACAGCCACTGCTTGTGCCCTTCACGCCTTCCTCAAGgtaggaatct ... tgcttttcagATGGCTGGTTTTGCACTTCACAAGAAATATGGATCGCAGTTCATGAAAATC
EST: gi|149076572|gb|EE165207.2|EE165207
EST:     CTCTTCCAGCTACTACAGCCACTGCTTGTGCCCTTCACGCCTTCCTCAAG                         ATGGCTGGTTTTGCACTTCACAAGAAATATGGATCGCAGTTCATGAAAATC
genomic: CTCTTCCAGCTACTACAGCCACTGCTTGTGCCCTTCACGCCTTCCTCAAGgtaggaatct ... tgcttttcagATGGCTGGTTTTGCACTTCACAAGAAATATGGATCGCAGTTCATGAAAATC