1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' |
ACCGAGCGACCTTTGGAGGAAACTGGAAACATCCATTACATTACTGGTATTGAAGACATTAATTCATCTAGTAAAGTTCAGGCTGGAACATCTTCGTCAAgtatgttgtctagtatatctctgaaataaatagttgttattaaaaaaaaatcctaagccaaaactgcaatttttctgtccaacag
species | Zea mays |
transcript | GRMZM2G410479_T01 |
intron # | 15 |
splice site | 5' |
intron type | U2 |
EST: TGAAGACATTAAT-CATCTAGTAAAGTTCAGGCTGGAACATCTTCGTCAA GTGCAATACATGCAGTATTATGCTCCTCCGGCAAATGAACTGCCTCAAGCAEST: gi|6859933|gb|AW355927.1|AW355927
genomic: TGAAGACATTAATTCATCTAGTAAAGTTCAGGCTGGAACATCTTCGTCAAgtatgttgtc ... tgtccaacagGTGCAATACATGCAGTATTATGCTCCTCCGGCAAATGAACTGCCTCAAGCA
EST: TGAAGACATTAAT-CATCTAGTAAAGTTCAGGCTGGAACATCTTCGTCAA GTGCAATACATGCAGTATTATGCTCCTCCGGCAAATGAACTGCCTCAAGCAEST: gi|78179130|gb|DV549503.1|DV549503
genomic: TGAAGACATTAATTCATCTAGTAAAGTTCAGGCTGGAACATCTTCGTCAAgtatgttgtc ... tgtccaacagGTGCAATACATGCAGTATTATGCTCCTCCGGCAAATGAACTGCCTCAAGCA
EST: TGAAGACATTAAT-CATCTAGTAAAGTTCAGGCTGGAACATCTTCGTCAA GTGCAATACATGCAGTATTATGCTCCTCCGGCAAATGAACTGCCTCAAGCAEST: gi|12045774|gb|BF727913.1|BF727913
genomic: TGAAGACATTAATTCATCTAGTAAAGTTCAGGCTGGAACATCTTCGTCAAgtatgttgtc ... tgtccaacagGTGCAATACATGCAGTATTATGCTCCTCCGGCAAATGAACTGCCTCAAGCA
EST: TGAAGACATTAA-TCATCTAGTAAAGTTCAGGCTGGAACATCTTCGTCAA GTGCAATACATGCAGTATTATGCTCCTCCGGCAAATGAACTGCCTCAAGCA
genomic: TGAAGACATTAATTCATCTAGTAAAGTTCAGGCTGGAACATCTTCGTCAAgtatgttgtc ... tgtccaacagGTGCAATACATGCAGTATTATGCTCCTCCGGCAAATGAACTGCCTCAAGCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ACCGAGCGACCTTTGGAGGAAACTGGAAACATCCATTACATTACTGGTATTGAAGACATTAATTCATCTAGTAAAGTTCAGGCTGGAACATCTTCGTCAAgtatgttgtctagtatatctctgaaataaatagttgttattaaaaaaaaatcctaagccaaaactgcaatttttctgtccaacag
- - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA