1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' |
TGGAATTGTTGGTGAAGCTTGTAAGGACTTTTGGTCCAATGATCCATTCAACAGTATCATCAGGTCCTTGTGTTGGTGTAGACCTTGAGGCAGAGCAAAGgtattgttttagatagctgcttatatgaaagaccattactagactacttgatgcgatttttatttattgtag
species | Zea mays |
transcript | GRMZM2G406553_T02 |
intron # | 15 |
splice site | 5' |
intron type | U2 |
EST: ACAGTATCATCAGGTCCTTGTGTTGGTGTAGACCTTGAGGCAGAGCAAAG GAGGGAGCGCTGCAATTTATGCTTCATTGAATTGGAGAATGCCAAAAATAAEST: gi|6095700|gb|AW120367.1|AW120367
genomic: ACAGTATCATCAGGTCCTTGTGTTGGTGTAGACCTTGAGGCAGAGCAAAGgtattgtttt ... tttattgtagGAGGGAGCGCTGCAATTTATGCTTCATTGAATTGGAGAATGCCAAAAATAA
EST: NCAGTATCATCAGGTCCTTGTGTTGGTGTAGACCTTGAGGCAGAGCAAAG GAGGGAGCGCTGCAATTTATGCTTCATTGAATTGGAGAATGCCAAAAATAAEST: gi|116825719|gb|EC869457.1|EC869457
genomic: ACAGTATCATCAGGTCCTTGTGTTGGTGTAGACCTTGAGGCAGAGCAAAGgtattgtttt ... tttattgtagGAGGGAGCGCTGCAATTTATGCTTCATTGAATTGGAGAATGCCAAAAATAA
EST: ACAGTATCATCAGGTCCTTGTGTTGGTGTAGACCTTGAGGCAGAGCAAAG GAGGGAGCGCTGCAATTTATGCTTCATTGAATTGGAGAATGCCAAAAATAAEST: gi|45568365|gb|CK986030.1|CK986030
genomic: ACAGTATCATCAGGTCCTTGTGTTGGTGTAGACCTTGAGGCAGAGCAAAGgtattgtttt ... tttattgtagGAGGGAGCGCTGCAATTTATGCTTCATTGAATTGGAGAATGCCAAAAATAA
EST: ACAGTATCATCAGGTCCTTGTGTTGGTGTAGACCTTGAGGCAGAGCAAAG GAGGGAGCGCTGCAATTTATGCTTCATTGAATTGGAGAATGCCAAAAATAAEST: gi|211485864|gb|FL429911.1|FL429911
genomic: ACAGTATCATCAGGTCCTTGTGTTGGTGTAGACCTTGAGGCAGAGCAAAGgtattgtttt ... tttattgtagGAGGGAGCGCTGCAATTTATGCTTCATTGAATTGGAGAATGCCAAAAATAA
EST: ACAGTATCATCAGGTCCTTGTGTTGGTGTAGACCTTGAGGCAGAGCAAAG GAGGGAGCGCTGCAATTTATGCTTCATTGAATTGGAGAATGCCAAAAATAAEST: gi|60348179|gb|DN215152.1|DN215152
genomic: ACAGTATCATCAGGTCCTTGTGTTGGTGTAGACCTTGAGGCAGAGCAAAGgtattgtttt ... tttattgtagGAGGGAGCGCTGCAATTTATGCTTCATTGAATTGGAGAATGCCAAAAATAA
EST: ACAGTATCATCAGGTCCTTGTGTTGGTGTAGACCTTGAGGCAGAGCAAAG GAGGGAGCGCTGCAATTTATGCTTCATTGAATTGGAGAATGCCAAAAATAAEST: gi|60401583|gb|DN234390.1|DN234390
genomic: ACAGTATCATCAGGTCCTTGTGTTGGTGTAGACCTTGAGGCAGAGCAAAGgtattgtttt ... tttattgtagGAGGGAGCGCTGCAATTTATGCTTCATTGAATTGGAGAATGCCAAAAATAA
EST: ACAGTATCATCAGGTCCTTGTGTTGGTGTAGACCTTGAGGCAGAGCAAAG GAGGGAGCGCTGCAATTTATGCTTCATTGAATTGGAGAATGCCAAAAATAAEST: gi|60340716|gb|DN207689.1|DN207689
genomic: ACAGTATCATCAGGTCCTTGTGTTGGTGTAGACCTTGAGGCAGAGCAAAGgtattgtttt ... tttattgtagGAGGGAGCGCTGCAATTTATGCTTCATTGAATTGGAGAATGCCAAAAATAA
EST: ACAGTATCATCAGGTCCTTGTGTTGGTGTAGACCTTGAGGCAGAGCAAAG GAGGGAGCGCTGCAATTTATGCTTCATTGAATTGGAGAATGCCAAAAATAAEST: gi|60398598|gb|DN231414.1|DN231414
genomic: ACAGTATCATCAGGTCCTTGTGTTGGTGTAGACCTTGAGGCAGAGCAAAGgtattgtttt ... tttattgtagGAGGGAGCGCTGCAATTTATGCTTCATTGAATTGGAGAATGCCAAAAATAA
EST: ACAGTATCATCAGGTCCTTGTGTTGGTGTAGACCTTGAGGCAGAGCAAAG GAGGGAGCGCTGCAATTTATGCTTCATTGAATTGGAGAATGCCAAAAATAA
genomic: ACAGTATCATCAGGTCCTTGTGTTGGTGTAGACCTTGAGGCAGAGCAAAGgtattgtttt ... tttattgtagGAGGGAGCGCTGCAATTTATGCTTCATTGAATTGGAGAATGCCAAAAATAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGGAATTGTTGGTGAAGCTTGTAAGGACTTTTGGTCCAATGATCCATTCAACAGTATCATCAGGTCCTTGTGTTGGTGTAGACCTTGAGGCAGAGCAAAGgtattgttttagatagctgcttatatgaaagaccattactagactacttgatgcgatttttatttattgtag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG