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TTGCTGCTGCTCTCGCATATCGAAATCCATTTGTGCTCCCAATAGATAGAAAAGAAGAAGCTGATGCTGTCAAAAGATCATTTGCTGGTGACTCGTGCAGgtaattattatagcaattctgccacttcgataaaaatcctaaggactgagggaacctataaggattcttttttcgaggcacctgattagttgatatttct...
species | Zea mays |
transcript | GRMZM2G399212_T01 |
intron # | 15 |
splice site | 5' |
intron type | U2 |
EST: AAAGAAGAAGCTGATGCTGTCAAAAGATCATTTGCTGGTGACTCGTGCAG TGATCACATTGCTCTTGTTAEST: gi|19058731|gb|BM737398.1|BM737398
genomic: AAAGAAGAAGCTGATGCTGTCAAAAGATCATTTGCTGGTGACTCGTGCAGgtaattatta ... tctttctcagTGATCACATTGCTCTTGTTA
EST: AAAGAAGAAGCTGATGCTGTCAAAAGATCATTTGCTGGTGACTCGTGCAG TGATCACATTGCTCTTGTTAAGGCGTTTGTAGCATGGAAGGATGCTAAAAGEST: gi|87153694|gb|DY398483.1|DY398483
genomic: AAAGAAGAAGCTGATGCTGTCAAAAGATCATTTGCTGGTGACTCGTGCAGgtaattatta ... tctttctcagTGATCACATTGCTCTTGTTAAGGCGTTTGTAGCATGGAAGGATGCTAAAAG
EST: AAAGAAGAAGCTGATGCTGTCAAAAGATCATTTGCTGGTGACTCGTGCAG TGATCACATTGCTCTTGTTAAGGCGTTTGTAGCATGGAAGGATGCTAAAAG
genomic: AAAGAAGAAGCTGATGCTGTCAAAAGATCATTTGCTGGTGACTCGTGCAGgtaattatta ... tctttctcagTGATCACATTGCTCTTGTTAAGGCGTTTGTAGCATGGAAGGATGCTAAAAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTGCTGCTGCTCTCGCATATCGAAATCCATTTGTGCTCCCAATAGATAGAAAAGAAGAAGCTGATGCTGTCAAAAGATCATTTGCTGGTGACTCGTGCAGgtaattattatagcaattctgccacttcgataaaaatcctaaggactgagggaacctataaggattcttttttcgaggcacctgattagttgatatttct
- - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gataaaaa