Sequence
atgc intronic sequence ATGC exonic sequenceGAAGCCAGGGCAGAAAGACATCTTCTACCTCACGGGAAGCAGCAAAGATCAGCTGGAGAAGTCTCCGTTCCTGGAGAGGCTAACCAAGAAGAACTACGAGgtatatatgtatgctgctggtttatccactttcattacagtgtggggtctggaatacagcttgagaagtaccaacgctgcgcttgttttgttttgttttgttttgtttttgcag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G399073_T02 (Zea mays), 5'ss of exon 15
lower sequence: LOC_Os06g50300.1 (Oryza sativa), 5'ss of exon 13
GAAGCCAGGGCAGAAAGACATCTTCTACCTCACGGGAAGCAGCAAAGATCAGCTGGAGAAGTCTCCGTTCCTGGAGAGGCTAACCAAGAAGAACTACGAGgtatatatgtatgctgctggtttatccactttcattacagtgtggggtctggaatacagcttgagaagtaccaacgctgcgcttgttttgttttgttttgttttgtttttgcag
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GAAGCCAGGGCAGAAGGACATCTTTTACATTACCGGAAGCAGCAAGGAACAATTAGAGAAATCACCGTTCCTTGAGAGGCTAACCAAAAAGAACTACGAGgtgtgt--------taccgagaggcctcatttttttacagtatcttatgtcatgcattctatgttttttttttttgaaaagaatgtattctatggtttctccttatgg------
upper sequence: GRMZM2G399073_T02 (Zea mays), 5'ss of exon 15
lower sequence: AT4G24190.1 (Arabidopsis thaliana), 5'ss of exon 13
GAAGCCAGGGCAGAAAGACATCTTCTACCTCACGGGAAGCAGCAAAGATCAGCTGGAGAAGTCTCCGTTCCTGGAGAGGCTAACCAAGAAGAACTACGAGgtatatatgtatgctgctggtttatccactttcattacagtgtggggtctggaatacagcttgagaagtaccaacgctgcgcttgttttgttttgttttgttttgtttttgcag
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GAAAAAGAGCCAAAAGGACATATTTTACATCACAGGAAGCAGCAAGGAACAGCTAGAGAAATCTCCATTCCTGGAGAGGCTCATCAAGAAGGGCTATGAGgtttgcat---tgcacacgaataattc---ttctttaaat-----gatctccaactc-gcataacacgttctcatact-tgtgttcccag------------------------
upper sequence: GRMZM2G399073_T02 (Zea mays), 5'ss of exon 15
lower sequence: Vv18s0001g14500.t01 (Vitis vinifera), 5'ss of exon 13
GAAGCCAGGGCAGAAAGACATCTTCTACCTCACGGGAAGCAGCAAAGATCAGCTGGAGAAGTCTCCGTTCCTGGAGAGGCTAACCAAGAAGAACTACGAGgtatatatgtatg------ctgctggtttatccactttcattacagtgtggggtctggaatacagcttgagaagtaccaacgctgcgctt----gttttgttttgtttt---gttttgtttttgcag
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GAAACCAGGACAGAAGGATATCTTCTACATCACGGGTAACAGCAAGGAGCAATTGGAGAAGTCTCCATTCCTTGAGAGGCTTACAAAGAAGAATTATGAGgtatgattggaaaagataactacttgcttttcaaccgtccttgattagtctggtctt--attcttttcctaaggtactatccttggtttttaacaacttgttttctttctgaatcattctattgcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|67024101|gb|CO452850.1|CO452850EST: AGCTGGAGAAGTCTCCGTTCCTCGAGAGGCTAACCAAGAAGAACTACGAG GTCATCTTCTTCACCGACCCTATGGACGAGTACCTGATGCAGTACCTGATG
genomic: AGCTGGAGAAGTCTCCGTTCCTGGAGAGGCTAACCAAGAAGAACTACGAGgtatatatgt ... gtttttgcagGTCATCTTCTTCACCGACCCTATGGACGAGTACCTGATGCAGTACCTGATG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GAAGCCAGGGCAGAAAGACATCTTCTACCTCACGGGAAGCAGCAAAGATCAGCTGGAGAAGTCTCCGTTCCTGGAGAGGCTAACCAAGAAGAACTACGAGgtatatatgtatgctgctggtttatccactttcattacagtgtggggtctggaatacagcttgagaagtaccaacgctgcgcttgttttgttttgttttgttttgtttttgcag
- - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC