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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATCCATGGTTTTCAAGTAATGAGTTTGTGCACTACTTAGATCATGCAAAATTGAGTCATCTTTCAAGGTTGACTATACCAGAATGGGGTACAATTCGAAGgtataatccagcaaaccttggaggatgtagtctttgtttcattgtcaattctgttagcattctgtttgtttatgctatatatactgaacaagtttttcctgcag

Basic information

species Zea mays
transcript GRMZM2G395749_T01
intron # 15
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211179376|gb|FL244880.1|FL244880
EST:     TTGAGTCATCTTTCAAGGTTGACTATACCAGAATGGGGTACAATTCGAAG                         CTCCCTTGGTATTCCACGTCGATTTTCAAATTATTTTCTGGCCGTGGAAAA
genomic: TTGAGTCATCTTTCAAGGTTGACTATACCAGAATGGGGTACAATTCGAAGgtataatcca ... tttcctgcagCTCCCTTGGTATTCCACGTCGATTTTCAAATTATTTTCTGGCCGTGGAAAA
EST: gi|211179375|gb|FL244879.1|FL244879
EST:     TTGAGTCATCTTTCAAGGTTGACTATACCAGAATGGGGTACAATTCGAAG                         CTCCCTTGGTATTCCACGTCGATTTTCAAATTATTTTCTGGCCGTGGAAAA
genomic: TTGAGTCATCTTTCAAGGTTGACTATACCAGAATGGGGTACAATTCGAAGgtataatcca ... tttcctgcagCTCCCTTGGTATTCCACGTCGATTTTCAAATTATTTTCTGGCCGTGGAAAA
EST: gi|211179377|gb|FL244881.1|FL244881
EST:     TTGAGTCATCTTTCAAGGTTGACTATACCAGAATGGGGTACAATTCGAAG                         CTCCCTTGGTATTCCACGTCGATTTTCAAATTATTTTCTGGCCGTGGAAAA
genomic: TTGAGTCATCTTTCAAGGTTGACTATACCAGAATGGGGTACAATTCGAAGgtataatcca ... tttcctgcagCTCCCTTGGTATTCCACGTCGATTTTCAAATTATTTTCTGGCCGTGGAAAA
EST: gi|31354962|gb|CD439319.1|CD439319
EST:     TTGAGTCATCTTTCAAGGTTGACTATACCAGAATGGGGTACAATTCGAAG                         CTCCCTTGGTATTCCACGTCGATTTTCAAATTATTTTCTGGCCGTGGAAAA
genomic: TTGAGTCATCTTTCAAGGTTGACTATACCAGAATGGGGTACAATTCGAAGgtataatcca ... tttcctgcagCTCCCTTGGTATTCCACGTCGATTTTCAAATTATTTTCTGGCCGTGGAAAA
EST: gi|211179378|gb|FL244882.1|FL244882
EST:     TTGAGTCATCTTTCAAGGTTGACTATACCAGAATGGGGTACAATTCGAAG                         CTCCCTTGGTATTCCACGTCGATTTTCAAATTATTTTCTGGCCGTGGAAAA
genomic: TTGAGTCATCTTTCAAGGTTGACTATACCAGAATGGGGTACAATTCGAAGgtataatcca ... tttcctgcagCTCCCTTGGTATTCCACGTCGATTTTCAAATTATTTTCTGGCCGTGGAAAA