1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' |
GGACTGCTCTAAAATACTAGAGAAAGTACGGCGTGATATTGAAGATCATGCACTTTCAATTCGTGAAAGAAAGCTATCAGAATTGACAACCCATGCTAAGgttatgtatggcaaactgaaagagagtttaattactagcttactaatgcataatttcttctggatttatttgcatattttttaagcataaatactgcaggggaagcctccactgtagtttatttgcatatgtgatattatctggttacgatatgttaataattgtagttgttttgtacttgcag
species | Zea mays |
transcript | GRMZM2G390374_T01 |
intron # | 15 |
splice site | 5' |
intron type | U2 |
EST: CACTTTCAATTCGTGAAAGAAAGCTATCAGAATTGACAACCCATGCTAAG GAGAAACTAAGAAAAGCACTAGCTGAACCTGTGGAGTCTCTATTTGATGCTEST: gi|19822789|gb|BQ048813.1|BQ048813
genomic: CACTTTCAATTCGTGAAAGAAAGCTATCAGAATTGACAACCCATGCTAAGgttatgtatg ... gtacttgcagGAGAAACTAAGAAAAGCACTAGCTGAACCTGTGGAGTCTCTATTTGATGCT
EST: CACTTTCAATTCGTGAAAGAAAGCTATCAGAATTGACAACCCATGCTAAG GAGAAACTAAGAAAAGCACTAGCTGAACCTGTGGAGTCTCTATTTGATGCTEST: gi|22489805|gb|BU049728.1|BU049728
genomic: CACTTTCAATTCGTGAAAGAAAGCTATCAGAATTGACAACCCATGCTAAGgttatgtatg ... gtacttgcagGAGAAACTAAGAAAAGCACTAGCTGAACCTGTGGAGTCTCTATTTGATGCT
EST: CACTTTCAATTCGTGAAAGAAAGCTATCAGAATTGACAACCCATGCTAAG GAGAAACTAAGAAAAGCACTAGCTGAACCTGTGGAGTCACAATATGATGCTEST: gi|87152185|gb|DY396974.1|DY396974
genomic: CACTTTCAATTCGTGAAAGAAAGCTATCAGAATTGACAACCCATGCTAAGgttatgtatg ... gtacttgcagGAGAAACTAAGAAAAGCACTAGCTGAACCTGTGGAGTCTCTATTTGATGCT
EST: CACTTTCAATTCGTGAAAGAAAGCTATCAGAATTGACAACCCATGCTAAG GAGAAACTAAGAAAAGCACTAGCTGAACCTGTGGAGTCTCTATTTGATGCTEST: gi|22489723|gb|BU049646.1|BU049646
genomic: CACTTTCAATTCGTGAAAGAAAGCTATCAGAATTGACAACCCATGCTAAGgttatgtatg ... gtacttgcagGAGAAACTAAGAAAAGCACTAGCTGAACCTGTGGAGTCTCTATTTGATGCT
EST: CACTTTCAATTCGTGAAAGAAAGCTATCAGAATTGACAACCCATGCTAAG GAGAAACTAAGAAAAGCACTAGCTGAACCTGTGGAGTCTCTATTTGATGCTEST: gi|87152634|gb|DY397423.1|DY397423
genomic: CACTTTCAATTCGTGAAAGAAAGCTATCAGAATTGACAACCCATGCTAAGgttatgtatg ... gtacttgcagGAGAAACTAAGAAAAGCACTAGCTGAACCTGTGGAGTCTCTATTTGATGCT
EST: CACTTTCAATTCGTGAAAGAAAGCTATCAGAATTGACAACCCATGCTAAG GAGAAACTAAGAAAAGCACTAGCTGAACCTGTGGAGTCTCTATTTGATGCTEST: gi|87152074|gb|DY396863.1|DY396863
genomic: CACTTTCAATTCGTGAAAGAAAGCTATCAGAATTGACAACCCATGCTAAGgttatgtatg ... gtacttgcagGAGAAACTAAGAAAAGCACTAGCTGAACCTGTGGAGTCTCTATTTGATGCT
EST: CACTTTCAATTCGTGAAAGAAAGCTATCAGAATTGACAACCCATGCTAAG GAGAAACTAAGAAAAGCACTAGCTGAACCTGTGGAGTCTCTATTTGATGCTEST: gi|166514303|gb|EG321399.1|EG321399
genomic: CACTTTCAATTCGTGAAAGAAAGCTATCAGAATTGACAACCCATGCTAAGgttatgtatg ... gtacttgcagGAGAAACTAAGAAAAGCACTAGCTGAACCTGTGGAGTCTCTATTTGATGCT
EST: CACTTTCAATTCGTGAAAGAAAGCTATCAGAATTGACAACCCATGCTAAG GAGAAACTAAGAAAAGGCACTAGCTGAACCEST: gi|18650031|gb|BM498850.1|BM498850
genomic: CACTTTCAATTCGTGAAAGAAAGCTATCAGAATTGACAACCCATGCTAAGgttatgtatg ... gtacttgcagGAGAAACTAAGAAAAG-CACTAGCTGAACC
EST: CACTTTCAATTCGTGAAAGAAAGCTATCAGAATTGACAACCCATGCTAAG GAGAAACTAAGAAAAGCACTAGCTGAACCTGTGGAGTCTCTATTTGATGCT
genomic: CACTTTCAATTCGTGAAAGAAAGCTATCAGAATTGACAACCCATGCTAAGgttatgtatg ... gtacttgcagGAGAAACTAAGAAAAGCACTAGCTGAACCTGTGGAGTCTCTATTTGATGCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGACTGCTCTAAAATACTAGAGAAAGTACGGCGTGATATTGAAGATCATGCACTTTCAATTCGTGAAAGAAAGCTATCAGAATTGACAACCCATGCTAAGgttatgtatggcaaactgaaagagagtttaattactagcttactaatgcataatttcttctggatttatttgcatattttttaagcataaatactgcaggggaagcctccactgtagtttatttgcatatgtgatattatctggttacgatatgttaataattgtagttgttttgtacttgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA