Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   		18  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGACGAAAACATGACTATGTGCAATAAATGGAGTCGTGATGAAAATCTAGTTCGGGCGGTAATTTGTGCAGGACTGTATCCAGGTGTTTCCTCTGTTTTGgtgagtttcttttatttaagattattttacataccctgcttttaacaattgcatattttcacacttttatgctttaaggttttatggttctatgctttat...

Basic information

species Zea mays
transcript GRMZM2G373175_T01
intron # 15
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G373175_T01 (Zea mays), 5'ss of exon 15
lower sequence: LOC_Os01g02884.1 (Oryza sativa), 5'ss of exon 9
TGACGAAAACATGACTATGTGCAATAAATGGAGTCGTGATGAAAATCTAGTTCGGGCGGTAATTTGTGCAGGACTGTATCCAGGTGTTTCCTCTGTTTTGgtgagtt-tcttttatttaagattattttacataccctgcttttaacaattgcatattt-tcacacttttatgctttaaggtt--ttatggttctatgctttat
||| ||||||||||||  ||||||||||||||| |||||||||||||||||||||||||| |||||||||||| | ||||||||||||||||||||| |||||||||  || | |||||  | |||||    |       ||||     ||| || |||   ||  || ||| ||||    ||   | ||   || ||      
TGATGAAAACATGACTGCGTGCAATAAATGGAGCCGTGATGAAAATCTAGTTCGGGCGGTCATTTGTGCAGGATTATATCCAGGTGTTTCCTCTGTTGTGgtgagttacctatcatttattaatatttctgtttttgcatttttcgtgcttgtatttttgctactgttgtatacttttgttttgcctgtgaagctgtgac----
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211272990|gb|FL022928.1|FL022928
EST:     TTCGGGCGGTAATTTGTGCAGGACTGTATCCAGGTGTTTCCTCTGTTTTG                         AACAAGGAGAAATCCATCTCCCTCAAGACAATGGAAGATGGACAGGTTATG
genomic: TTCGGGCGGTAATTTGTGCAGGACTGTATCCAGGTGTTTCCTCTGTTTTGgtgagtttct ... ataatttcagAACAAGGAGAAATCCATCTCCCTCAAGACAATGGAAGATGGACAGGTTATG
EST: gi|211272993|gb|FL022931.1|FL022931
EST:     TTCGGGCGGTAATTTGTGCAGGACTGTATCCAGGTGTTTCCTCTGTTTTG                         AACAAGGAGAAATCCATCTCCCTCAAGACAATGGAAGATGGACAGGTTATG
genomic: TTCGGGCGGTAATTTGTGCAGGACTGTATCCAGGTGTTTCCTCTGTTTTGgtgagtttct ... ataatttcagAACAAGGAGAAATCCATCTCCCTCAAGACAATGGAAGATGGACAGGTTATG
EST: gi|211272997|gb|FL022935.1|FL022935
EST:     TTCGGGCGGTAATTTGTGCAGGACTGTATCCAGGTGTTTCCTCTGTTTTG                         AACAAGGAGAAATCCATCTCCCTCAAGACAATGGAAGATGGACAGGTTATG
genomic: TTCGGGCGGTAATTTGTGCAGGACTGTATCCAGGTGTTTCCTCTGTTTTGgtgagtttct ... ataatttcagAACAAGGAGAAATCCATCTCCCTCAAGACAATGGAAGATGGACAGGTTATG
EST: gi|211272995|gb|FL022933.1|FL022933
EST:     TTCGGGCGGTAATTTGTGCAGGACTGTATCCAGGTGTTTCCTCTGTTTTG                         AACAAGGAGAAATCCATCTCCCTCAAGACAATGGAAGATGGACAGGTTATG
genomic: TTCGGGCGGTAATTTGTGCAGGACTGTATCCAGGTGTTTCCTCTGTTTTGgtgagtttct ... ataatttcagAACAAGGAGAAATCCATCTCCCTCAAGACAATGGAAGATGGACAGGTTATG
EST: gi|211272996|gb|FL022934.1|FL022934
EST:     TTCGGGCGGTAATTTGTGCAGGACTGTATCCAGGTGTTTCCTCTGTTTTG                         AACAAGGAGAAATCCATCTCCCTCAAGACAATGGAAGATGGACAGGTTATG
genomic: TTCGGGCGGTAATTTGTGCAGGACTGTATCCAGGTGTTTCCTCTGTTTTGgtgagtttct ... ataatttcagAACAAGGAGAAATCCATCTCCCTCAAGACAATGGAAGATGGACAGGTTATG
EST: gi|211272991|gb|FL022929.1|FL022929
EST:     TTCGGGCGGTAATTTGTGCAGGACTGTATCCAGGTGTTTCCTCTGTTTTG                         AACAAGGAGAAATCCATCTCCCTCAAGACAATGGAAGATGGACAGGTTATG
genomic: TTCGGGCGGTAATTTGTGCAGGACTGTATCCAGGTGTTTCCTCTGTTTTGgtgagtttct ... ataatttcagAACAAGGAGAAATCCATCTCCCTCAAGACAATGGAAGATGGACAGGTTATG
EST: gi|211272994|gb|FL022932.1|FL022932
EST:     TTCGGGCGGTAATTTGTGCAGGACTGTATCCAGGTGTTTCCTCTGTTTTG                         AACAAGGAGAAATCCATCTCCCTCAAGACAATGGAAGATGGACAGGTTATG
genomic: TTCGGGCGGTAATTTGTGCAGGACTGTATCCAGGTGTTTCCTCTGTTTTGgtgagtttct ... ataatttcagAACAAGGAGAAATCCATCTCCCTCAAGACAATGGAAGATGGACAGGTTATG
EST: gi|211272992|gb|FL022930.1|FL022930
EST:     TTCGGGCGGTAATTTGTGCAGGACTGTATCCAGGTGTTTCCTCTGTTTTG                         AACAAGGAGAAATCCATCTCCCTCAAGACAATGGAAGATGGACAGGTTATG
genomic: TTCGGGCGGTAATTTGTGCAGGACTGTATCCAGGTGTTTCCTCTGTTTTGgtgagtttct ... ataatttcagAACAAGGAGAAATCCATCTCCCTCAAGACAATGGAAGATGGACAGGTTATG