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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTTTGAGGTTCTTGGTGACAATGACTCTCCTGTCATGCCCATAATGCTCTACAATCCGGCTAAGATTCCTGCATTCTCTAGGGAGTGCCTTAGACAAAAGgttagtagtagagtttgtcaggatattctgaagatccaaatagcactatgcttttggtatactttttttttttaaaatactttgtttgagaattgtggtgctaatagcaatctgcatgtagtccatttccatcactatttgcacccactggttttgttcttcctatctgtcatggtacttataagatacttatctttcag

Basic information

species Zea mays
transcript GRMZM2G357734_T03
intron # 15
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G357734_T03 (Zea mays), 5'ss of exon 15
lower sequence: LOC_Os11g31640.1 (Oryza sativa), 5'ss of exon 10
TTTTGAGGTTCTTGGTGACAATGACTCTCCTGTCATGCCCATAATGCTCTACAATCCGGCTAAGATTCCTGCATTCTCTAGGGAGTGCCTTAGACAAAAGgttagtagtagagtttgtcaggat--attctgaagatccaaatagcactatgcttttggtatacttttt----ttttttaaaatactttgtttgagaattgtggtgctaatagcaatctgcatgtagtccatttccatcactatttgcacccactggttttgttcttcctatctgtcatggtacttataagatacttatctttcag
|||||||||||| || |||||||||||||| || ||||| ||||||||||||||||| || || ||||| || || || |||||||||||||||||||||||||||| | |  |        ||  ||  | |  |     | || |  ||| |||| |     |||||    ||   ||       ||        | ||  |||  | | ||| |                                                                                         
TTTTGAGGTTCTCGGAGACAATGACTCTCCAGTTATGCCAATAATGCTCTACAATCCAGCCAAAATTCCAGCTTTTTCCAGGGAGTGCCTTAGACAAAAGgttagtaatggtatagaatgctatttatcttcagaaatggtacagaataatggtttttgccagttttttgtcgttccctagcccctattaccgtgcgactgatgtggcactggcatttcag-------------------------------------------------------------------------------------

upper sequence: GRMZM2G357734_T03 (Zea mays), 5'ss of exon 15
lower sequence: GLYMA02G07250.1 (Glycine max), 5'ss of exon 10
TTTTGAGGTTCTTGGTGACAATGACTCTCCTGTCATGCCCATAATGCTCTACAATCCGGCTAAGATTCCTGCATTCTCTAGGGAGTGCCTTAGACAAAAGgttagtagtagagtttgtcaggatattctgaagatccaaatagcactatgcttttggtatactttttttttttaaaatactttgtttgagaattgtggtgctaatagcaatctgcatgtagtccatttccatcactatttgcacccactggttttgttcttcctatctgtcatggtacttataagatacttatctttcag
 |||||||||||||| || ||||| ||||| || ||||| || ||||| ||||| ||||| || || ||||| || || || |||||||| |  || ||                ||| || | ||    || |||||| || |             ||| ||  || ||  ||   ||| |  | | |||||     || ||||     | | ||  |  |  |||||                                                                       
ATTTGAGGTTCTTGGGGATAATGATTCTCCAGTAATGCCAATCATGCTTTACAACCCGGCCAAAATCCCTGCCTTTTCAAGAGAGTGCCTCAAGCAGAA----------------Tgtgagaacatc--aaatatccaactatc-------------tatgctccttgttgataccctacatcatataagaatgaatttgttaattaatgtttaca-attttttatttcag---------------------------------------------------------------------

upper sequence: GRMZM2G357734_T03 (Zea mays), 5'ss of exon 15
lower sequence: GLYMA16G26210.1 (Glycine max), 5'ss of exon 10
TTTTGAGGTTCTTGGTGACAATGACTCTCCTGTCATGCCCATAATGCTCTACAATCCGGCTAAGATTCCTGCATTCTCTAGGGAGTGCCTTAGACAAAAGgttagtagtagagtttgtcaggatattctgaagatccaaatagcactatgcttttggtatactttttttttttaaaatactttgtttgagaattgtggtgctaatagcaatctgcatgtagtccatttccatcactatttgcacccactggttttgttcttcctatctgtcatggtacttataagatacttatctttcag
 |||||||||||||| || ||||| ||||| || ||||| || ||||| ||||| || || || || ||||| ||||| || |||||||| |  || || || ||    |   |    |   ||  ||         |     ||  ||| | |  | ||    || ||  | ||  |      |||  |||||  |                                                                                                       
ATTTGAGGTTCTTGGGGATAATGATTCTCCAGTAATGCCAATCATGCTTTACAACCCCGCCAAAATCCCTGCCTTCTCAAGAGAGTGCCTCAAGCAGAATgtaagatcaaacatccaactttatgctccttgtcgataccctacatcatg-tataagaatgaaattgttaatcaatgtttaccatttttgaattcag-------------------------------------------------------------------------------------------------------

upper sequence: GRMZM2G357734_T03 (Zea mays), 5'ss of exon 15
lower sequence: Vv17s0000g00500.t01 (Vitis vinifera), 5'ss of exon 11
TTTTGAGGTTCTTGGTGACAATGACTCTCCTGTCATGCCCATAATGCTCTACAATCCGGCTAAGATTCCTGCATTCTCTAGGGAGTGCCTTAGACAAAAGgttagtagtagagtttgtcaggatattctgaagatccaaatagcactatgcttttggtatactttttttttttaaaatactttgtttgagaattgtggtgctaatagcaatctgcatgtagtccatttccatcactatttgcacccactggttttgttcttcctatctgtcatggtacttataagatacttatctttcag
 |||||||||||||| || ||||| |||||||| ||||| |||||||| |||||||| || || |||||||| || ||  ||||||| || | ||| || || ||        ||| ||   |  ||||  | || ||            |  ||  | | |||||  || || |   |  | | |  |  |  | | | | ||  |  ||     ||||   || | |  ||| || |      | |  |||    |   | | | || | | ||| | | ||| || |  | || |||
CTTTGAGGTTCTTGGAGATAATGATTCTCCTGTAATGCCAATAATGCTTTACAATCCAGCCAAAATTCCTGCCTTTTCGCGGGAGTGTCTCAAACAGAATgtaagc-------tttatctttaatttctatacattca------------ccattcatgt-cttttcattcttgattaaagtagctgcaatacagagattccaa--gtcattcatttgtatagcactgc--tcattaat------ctccagttcaagttcacttgtgtggc-tagtattgacaagtta-tgctgttccag

upper sequence: GRMZM2G357734_T03 (Zea mays), 5'ss of exon 15
lower sequence: Vv14s0068g01300.t01 (Vitis vinifera), 5'ss of exon 10
TTTTGAGGTTCTTGGTGACAATGACTCTCCTGTCATGCCCATAATGCTCTACAATCCGGCTAAGATTCCTGCATTCTCTAGGGAGTGCCTTAGACAAAAGgttagtagtagagtttgtcaggatattctgaagatccaaatagcactatgcttttggtatactttttttttttaaaatactttgtttgagaattgtggtgctaatagcaatctgcatgtagtccatttccatcactatttgcacccactggttttgttcttcctatctgtcatggtacttataagatacttatctttcag
||||||||||||||| || ||||||||||| || ||||| |||||||| || ||||| |  || |||||||| |||||  | |||||||| |  ||||| ||        ||||   ||| || || |    |  | | |    |||||| || |   || ||    ||||   |  |  | | | |  ||  |||  | | ||| |||       | || ||   || |||  || |||           |  || | || |                                     
TTTTGAGGTTCTTGGGGATAATGACTCTCCAGTGATGCCAATAATGCTTTATAATCCTGGCAAAATTCCTGCCTTCTCGCGAGAGTGCCTCAAGCAAAATgt--------gagtccatcaagacatgcacgtgtcctata----actatgattattccattctggactttt---agctcatgtctatatgacctgtccttcaaatggcaca----gtttattctcatttcatggctttttatcaaagtcaatggtgctgttacag-----------------------------------