1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' |
TCACTATGCTCATGGGATCCTAGCAAGAGACCAAAGGCCACAGAAGTCCTCCAGCATACCTTCTTCCAGgtaacagtattccttctactttatttttagtggcaaggttcagttattgtctcctcagcactgtaataagttttcctgttacccatatttag
species | Zea mays |
transcript | GRMZM2G178822_T01 |
intron # | 15 |
splice site | 5' |
intron type | U2 |
EST: CTAGCAAGAGACCAAAGGCCACAGAAGTCCTCCAGCATACCTTCTTCCAG GGTTGTACATGTGTTCCGCTTCCTGTCCGTCGGAAATCTTCATCGEST: gi|67015254|gb|CO444003.1|CO444003
genomic: CTAGCAAGAGACCAAAGGCCACAGAAGTCCTCCAGCATACCTTCTTCCAGgtaacagtat ... ccatatttagGGTTGTACATGTGTTCCGCTTCCTGTCCGTCGGAAAGCTTCATCG
EST: CTAGCAAGAGACCAAAGGCCACAGAAGTCCTCCAGCATACCTTCTTCCAG GGTTGTACATGTGTTCCGCTTCCTGTCCGTCGGAAATCTTCATCGCTTCCTEST: gi|60352824|gb|DN219797.1|DN219797
genomic: CTAGCAAGAGACCAAAGGCCACAGAAGTCCTCCAGCATACCTTCTTCCAGgtaacagtat ... ccatatttagGGTTGTACATGTGTTCCGCTTCCTGTCCGTCGGAAAGCTTCATCGCTTCCT
EST: CTAGCAAGAGACCAAAGGCCACAGAAGTCCTCCAGCATACCTTCTTCCAG GGTTGTACATGTGTTCCGCTTCCTGTCCGTCGGAAAGCTTCATCGCTTCCTEST: gi|28188021|gb|CB179631.1|CB179631
genomic: CTAGCAAGAGACCAAAGGCCACAGAAGTCCTCCAGCATACCTTCTTCCAGgtaacagtat ... ccatatttagGGTTGTACATGTGTTCCGCTTCCTGTCCGTCGGAAAGCTTCATCGCTTCCT
EST: CTAGCAAGAGACCAAAGGCCACAGAAGTCCTCCAGCATACCTTCTTCCAG GGTTGTACATGTGTTCCGCTTCCTGTCCGTCTGAAAGCTTCATCGCTTCCTEST: gi|211493408|gb|FL041695.1|FL041695
genomic: CTAGCAAGAGACCAAAGGCCACAGAAGTCCTCCAGCATACCTTCTTCCAGgtaacagtat ... ccatatttagGGTTGTACATGTGTTCCGCTTCCTGTCCGTCGGAAAGCTTCATCGCTTCCT
EST: CTAGCAAGAGACCAAAGGCCACAGAAGTCCTCCAGCATACCTTCTTCCAG GGTTGTACATGTGTTCCGCTTCCTGTCCGTCGGAAAGCTTCATCGCTTCCT
genomic: CTAGCAAGAGACCAAAGGCCACAGAAGTCCTCCAGCATACCTTCTTCCAGgtaacagtat ... ccatatttagGGTTGTACATGTGTTCCGCTTCCTGTCCGTCGGAAAGCTTCATCGCTTCCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCACTATGCTCATGGGATCCTAGCAAGAGACCAAAGGCCACAGAAGTCCTCCAGCATACCTTCTTCCAGgtaacagtattccttctactttatttttagtggcaaggttcagttattgtctcctcagcactgtaataagttttcctgttacccatatttag
- - - - - - - - - - AGCAAG
- - - - - - - - - - - GCAAGA
- - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - AGAAGT