Sequence
atgc intronic sequence ATGC exonic sequenceGTGAATTGCTTGGGTCCTTTGGTGACAATGAACTATCTCCTGAGTGTCTTGATGGTGCTCAGAGATTCTTGAAGCCTGATGGGATTTCCATTCCTTCATCgtactgaaccttttcttatacatatatttccttaattcctgatgtcaaaaatatgttaaataatatcatttgattgtttgcttatgtttctttgtag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G169927_T02 (Zea mays), 5'ss of exon 15
lower sequence: LOC_Os02g04660.2 (Oryza sativa), 5'ss of exon 11
GTGAATTGCTTGGGTCCTTTGGTGACAATGAACTATCTCCTGAGTGTCTTGATGGTGCTCAGAGATTCTTGAAGCCTGATGGGATTTCCATTCCTTCATCgtactgaaccttt---tcttatacatatatttccttaattcctgatgtcaaaaatatgttaaata-----atatcatttgattgtttg----cttatgtttctttgtag
|||| |||||||| ||||||||||| |||||||| ||||| |||||||| |||||||||||||||||||||||||| ||||||||||| |||||||||||||||||| | ||| || | ||||||| | | ||| || |||| | || | ||| | | || || |||| |||||||| ||||| ||
GTGAGTTGCTTGGTTCCTTTGGTGATAATGAACTTTCTCCCGAGTGTCTAGATGGTGCTCAGAGATTCTTGAAGCCAGATGGGATTTCTATTCCTTCATCgtactgaccttttctgtccttagtctatattttcatctttcttgg-atcaattaaatcccagatatccttttgttcttatatcatttgataacttatgttcctttgcag
upper sequence: GRMZM2G169927_T02 (Zea mays), 5'ss of exon 15
lower sequence: AT4G31120.2 (Arabidopsis thaliana), 5'ss of exon 17
GTGAATTGCTTGGGTCCTTTGGTGACAATGAACTATCTCCTGAGTGTCTTGATGGTGCTCAGAGATTCTTGAAGCCTGATGGGATTTCCATTCCTTCATCgtac-tgaaccttttcttatacat-atatttccttaattcctgatgtcaaaaatatgttaaataatatcatttgattgtttgcttatgtttctttgtag
| ||| |||| || || ||||| ||||||||||| |||||||||||||||||||| || || || || ||||||| || || ||||| || || || ||||| || || ||| || | | ||||| | | || || | | || ||| | | | | | | || ||
GCGAACTGCTGGGTTCTTTTGGAGACAATGAACTTTCTCCTGAGTGTCTTGATGGAGCCCAAAGGTTTCTGAAGCCAGACGGAATTTCAATACCATCCTCgtatgtgtactccttcgcttagttgaaatttcataagaaactcatctgtccttttgtttctctaactggaggaggaacatcgttattactttttcag--
upper sequence: GRMZM2G169927_T02 (Zea mays), 5'ss of exon 15
lower sequence: Vv04s0008g03120.t01 (Vitis vinifera), 5'ss of exon 17
GTGAATTGCTTGGGTCCTTTGGTGACAATGAACTATCTCCTGAGTGTCTTGATGGTGCTCAGAGATTCTTGAAGCCTGATGGGATTTCCATTCCTTCATCgtactgaaccttttcttatacatatatttccttaattcctgatgtcaaaaatatgttaaataatatcattt----gattgtttgcttatgtttctttgtag
|||| ||||| || || |||||||||||||| || |||||||||||||||||||| ||||| ||||| ||||||| ||||| ||||| || || |||||||| ||| || | |||| || ||||| | | | | || | | | || || ||| | | | | || | |||| | ||
GTGAGTTGCTGGGTTCTTTTGGTGACAATGAGCTGTCTCCTGAGTGTCTTGATGGAGCTCAAAGATTTTTGAAGCAAGATGGAATTTCAATACCATCATCgtatgtaactttgttttatttatttattttttggaaagataaatgtaatagtgtatttctgtatttcagcttaaaaaatttgtgttgatgtccactgata-Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|211483570|gb|FL225315.1|FL225315EST: TCTTGAAGCCTGATGGGATTTCCATTCCTTCATC ATACACCAGCTTCATCCAACCAATAACAGCATCAAAATTGCACAACGAT
genomic: TCTTGAAGCCTGATGGGATTTCCATTCCTTCATCgtactgaacc ... ttctttgtagATACACCAGCTTCATCCAACCAATAACAGCATCAAAATTGCACAACGAT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GTGAATTGCTTGGGTCCTTTGGTGACAATGAACTATCTCCTGAGTGTCTTGATGGTGCTCAGAGATTCTTGAAGCCTGATGGGATTTCCATTCCTTCATCgtactgaaccttttcttatacatatatttccttaattcctgatgtcaaaaatatgttaaataatatcatttgattgtttgcttatgtttctttgtag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC