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CTTTGGTATAAGATTGGAGAATGTACTTATTTGCAAAGACGCCAATGCTAAGTTTAATTTTGGAGATAAAGGTTATTTGGCATTTGAACATATAACATGGgtaagcactaattgtttgattgctttcttctacatgagtatagaagagtgtctgactatattcagtgtgcactcatgctcaatattattgttatatgatc...
species | Zea mays |
transcript | GRMZM2G169095_T01 |
intron # | 15 |
splice site | 5' |
intron type | U2 |
EST: AGTTTAATTTTGGAGATAAAGGTTATTTGGCATTTGAACATATAACATGG GCTCCGTACCAGACCAAGCTGATAGACACCGGGCTTCTGACCCCTGTTGAGEST: gi|28984456|gb|BQ539072.2|BQ539072
genomic: AGTTTAATTTTGGAGATAAAGGTTATTTGGCATTTGAACATATAACATGGgtaagcacta ... taatgtgtagGCTCCATACCAGACCAAGCTGATAGACACCGGGCTTCTGACCCCTGTTGAG
EST: AGTTTAATTTTGGAGATAAAGGTTATTTGGCATTTGAACATATAACATGG GCTCCATACCAGACCAAGCTGATAGACACCGGGCTTCTGACCCCTGTTGAGEST: gi|60395851|gb|DN228721.1|DN228721
genomic: AGTTTAATTTTGGAGATAAAGGTTATTTGGCATTTGAACATATAACATGGgtaagcacta ... taatgtgtagGCTCCATACCAGACCAAGCTGATAGACACCGGGCTTCTGACCCCTGTTGAG
EST: AGTTTAATTTTGGAGATAAAGGTTATTTGGCATTTGAACATATAACATGG GCTCCGTACCAGACCAAGCTGATAGACACCGGGCTTCTGACCCCTGTTGAGEST: gi|211089695|gb|FL030414.1|FL030414
genomic: AGTTTAATTTTGGAGATAAAGGTTATTTGGCATTTGAACATATAACATGGgtaagcacta ... taatgtgtagGCTCCATACCAGACCAAGCTGATAGACACCGGGCTTCTGACCCCTGTTGAG
EST: AGTTTAATTTTGGAGATAAAGGTTATTTGGCATTTGAACATATAACATGG GCTCCATACCAGACCAAGCTGATAGACACCGGGCTTCTGACCC-TGTTEST: gi|211089690|gb|FL030409.1|FL030409
genomic: AGTTTAATTTTGGAGATAAAGGTTATTTGGCATTTGAACATATAACATGGgtaagcacta ... taatgtgtagGCTCCATACCAGACCAAGCTGATAGACACCGGGCTTCTGACCCCTGTT
EST: AGTTTAATTTTGGAGATAAAGGTTATTTGGCATTTGAACATATAACATGG GCTCCATACCAGACCAAGCTGATAGACACCGGGCTTCTGEST: gi|148948655|gb|EC898569.2|EC898569
genomic: AGTTTAATTTTGGAGATAAAGGTTATTTGGCATTTGAACATATAACATGGgtaagcacta ... taatgtgtagGCTCCATACCAGACCAAGCTGATAGACACCGGGCTTCTG
EST: AGTTTAATTTTGGAGATAAAGGTTATTTGGCATTTGAACATATAACATGG GCTCCATACCAGACCAAGCTGATAGACACCGGGCTTCTGACCCCTGTTGAGEST: gi|71439289|gb|DR820339.1|DR820339
genomic: AGTTTAATTTTGGAGATAAAGGTTATTTGGCATTTGAACATATAACATGGgtaagcacta ... taatgtgtagGCTCCATACCAGACCAAGCTGATAGACACCGGGCTTCTGACCCCTGTTGAG
EST: AGTTTAATTTTGGAGATAAAGGTTATTTGGCATTTGAACATATAACATGG GCTCCATACCAGACCAAGCTGATAGACACCGGGCTTCTGACCCCTGTTGAGEST: gi|71760087|gb|DR958024.1|DR958024
genomic: AGTTTAATTTTGGAGATAAAGGTTATTTGGCATTTGAACATATAACATGGgtaagcacta ... taatgtgtagGCTCCATACCAGACCAAGCTGATAGACACCGGGCTTCTGACCCCTGTTGAG
EST: AGTTTAATTTTGGAGATAAAGGTTATTTGGCATTTGAACATATAACATGG GCTCCATACCAGACCAAGCTGATAGACACCGGGCTTCTGACCCCTGTTGAGEST: gi|211507045|gb|FL413323.1|FL413323
genomic: AGTTTAATTTTGGAGATAAAGGTTATTTGGCATTTGAACATATAACATGGgtaagcacta ... taatgtgtagGCTCCATACCAGACCAAGCTGATAGACACCGGGCTTCTGACCCCTGTTGAG
EST: ATAAAGGTTATTTGGCATTTGAACATATAACATGG GCTCCATACCAGACCAAGCTGATAGACACCGAGCTTCTGACCCCTGTTGAGEST: gi|67010801|gb|CO439550.1|CO439550
genomic: ATAAAGGTTATTTGGCATTTGAACATATAACATGGgtaagcacta ... taatgtgtagGCTCCATACCAGACCAAGCTGATAGACACCGGGCTTCTGACCCCTGTTGAG
EST: AGTTTAATTTTGGAGATAAAGGTTATTTGGCATTTGAACATATAACATGG GCTCCGTACCAGACCAAGCTGATAGACACCGGGCTTCTGACCCCTGTTGAGEST: gi|211089693|gb|FL030412.1|FL030412
genomic: AGTTTAATTTTGGAGATAAAGGTTATTTGGCATTTGAACATATAACATGGgtaagcacta ... taatgtgtagGCTCCATACCAGACCAAGCTGATAGACACCGGGCTTCTGACCCCTGTTGAG
EST: AGTTTAATTTTGGAGATAAAGGTTATTTGGCATTTGAACATATAACATGG GCTCCATACCAGACCAAGCTGATAGACACCGAGCTTCTGACCCCTGTTGAGEST: gi|211089692|gb|FL030411.1|FL030411
genomic: AGTTTAATTTTGGAGATAAAGGTTATTTGGCATTTGAACATATAACATGGgtaagcacta ... taatgtgtagGCTCCATACCAGACCAAGCTGATAGACACCGGGCTTCTGACCCCTGTTGAG
EST: AGTTTAATTTTGGAGATAAAGGTTATTTGGCATTTGAACATATAACATGG GCTCCATACCAGACCAAGCTGATAEST: gi|86467956|gb|DY234326.1|DY234326
genomic: AGTTTAATTTTGGAGATAAAGGTTATTTGGCATTTGAACATATAACATGGgtaagcacta ... taatgtgtagGCTCCATACCAGACCAAGCTGATA
EST: AGTTTAATTTTGGAGATAAAGGTTATTTGGCATTTGAACATATAACATGG GCTCCATACCAGACCAAGCTGATAGACACCGGGCTTCTGACCCCTGTTGAGEST: gi|211089696|gb|FL030415.1|FL030415
genomic: AGTTTAATTTTGGAGATAAAGGTTATTTGGCATTTGAACATATAACATGGgtaagcacta ... taatgtgtagGCTCCATACCAGACCAAGCTGATAGACACCGGGCTTCTGACCCCTGTTGAG
EST: GTTTAATTTTGGAGATAAAGGTTATTTGGCATTTGAACATATAAWCATGG GCTCCATACCAGACCAAGCTGATAGACACCGAGCTTCTGACCCCTGTTGAEST: gi|211092150|gb|FL030416.1|FL030416
genomic: GTTTAATTTTGGAGATAAAGGTTATTTGGCATTTGAACATATAA-CATGGgtaagcacta ... taatgtgtagGCTCCATACCAGACCAAGCTGATAGACACCGGGCTTCTGACCCCTGTTGA
EST: AGTTTAATTTTGGAGATAAAGGTTATTTGGCATTTGAACATATAACATGG GCTCCATACCAGACCAAGCTGATAGACACCGAGCTTCTGACCCCTGTTGAGEST: gi|166621297|gb|EG158029.1|EG158029
genomic: AGTTTAATTTTGGAGATAAAGGTTATTTGGCATTTGAACATATAACATGGgtaagcacta ... taatgtgtagGCTCCATACCAGACCAAGCTGATAGACACCGGGCTTCTGACCCCTGTTGAG
EST: GGTTATTTGGCATTTGAACATATAACATGG GCTCCATACCAGACCAAGCTGATAGACACCGAGCTTCTGACCCCTGTTGAG
genomic: GGTTATTTGGCATTTGAACATATAACATGGgtaagcacta ... taatgtgtagGCTCCATACCAGACCAAGCTGATAGACACCGGGCTTCTGACCCCTGTTGAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTTTGGTATAAGATTGGAGAATGTACTTATTTGCAAAGACGCCAATGCTAAGTTTAATTTTGGAGATAAAGGTTATTTGGCATTTGAACATATAACATGGgtaagcactaattgtttgattgctttcttctacatgagtatagaagagtgtctgactatattcagtgtgcactcatgctcaatattattgttatatgatc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT