Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGAGAAAGAGAATTACCGATTTGGATGTAACTGAGGGTGATCTTCCATGGTGGTGTGTGGACTGCATTACTCTCAATCGATATCCAAAGGAGAATACAAAgtaaacgctcattacaattccctattttatcctcagagatgctattttcccttgatatatgatatatcttatattgtcttggtttttgatcaactacccc...

Basic information

species Zea mays
transcript GRMZM2G167999_T01
intron # 15
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71317699|gb|DR795606.1|DR795606
EST:     TGGTGTGTGGACTGCATTACTCTCAATCGATATCCAAAGGAGAATACAAA                         ATGCGGGTTTTATTTACACCCTGCTGAAGGCTCGCCTGCACCAAACATAAC
genomic: TGGTGTGTGGACTGCATTACTCTCAATCGATATCCAAAGGAGAATACAAAgtaaacgctc ... tataatgcagATGCGGGTTTTATTTACACCCTGCTGAAGGCTCGCCTGCACCAAACATAAC
EST: gi|6056606|gb|AW091011.1|AW091011
EST:     TGGTGTGTGGACTGCATTACTCTCAATCGATATCCAAAGGAGAATACAAA                         ATGCGGGTTTTATTTACACCCTGCTGAAGGCTCGCCTGCACCAAACATAAC
genomic: TGGTGTGTGGACTGCATTACTCTCAATCGATATCCAAAGGAGAATACAAAgtaaacgctc ... tataatgcagATGCGGGTTTTATTTACACCCTGCTGAAGGCTCGCCTGCACCAAACATAAC
EST: gi|67025265|gb|CO454014.1|CO454014
EST:     TGGTGTGTGGACTGCATTACTCTCAATCGATATCCAAAGGAGAATACAAA                         ATGCGGGTTTTATTTACACCCTGCTGAAGGCTCGCCTGCACCAAACATAAC
genomic: TGGTGTGTGGACTGCATTACTCTCAATCGATATCCAAAGGAGAATACAAAgtaaacgctc ... tataatgcagATGCGGGTTTTATTTACACCCTGCTGAAGGCTCGCCTGCACCAAACATAAC
EST: gi|6020795|gb|AW065723.1|AW065723
EST:     TGGTGTGTGGACTGCATTACTCTCAATCGATATCCAAAGGAGAATACAAA                         ATGCGGGTTTTATTTACACCCTGCTGAAGGCTCGCCTGCACCAAACATAAC
genomic: TGGTGTGTGGACTGCATTACTCTCAATCGATATCCAAAGGAGAATACAAAgtaaacgctc ... tataatgcagATGCGGGTTTTATTTACACCCTGCTGAAGGCTCGCCTGCACCAAACATAAC
EST: gi|211189104|gb|FL252863.1|FL252863
EST:     TGGTGTGTGGACTGCATTACTCTCAATCGATATCCAAAGGAGAATACAAA                         ATGCGGGTTTTATTTACACCCTGCTGAAGGCTCGCCTGCACCAAACATAAC
genomic: TGGTGTGTGGACTGCATTACTCTCAATCGATATCCAAAGGAGAATACAAAgtaaacgctc ... tataatgcagATGCGGGTTTTATTTACACCCTGCTGAAGGCTCGCCTGCACCAAACATAAC
EST: gi|32919061|gb|CF023873.1|CF023873
EST:     TGGTGTGTGGACTGCATTACTCTCAATCGATATCCCAAGGAGAATACAAA                         ATGCGGGTTTTATTTACACCCTGCTGAAGGCTCGCCTGCACCAAACATAAC
genomic: TGGTGTGTGGACTGCATTACTCTCAATCGATATCCAAAGGAGAATACAAAgtaaacgctc ... tataatgcagATGCGGGTTTTATTTACACCCTGCTGAAGGCTCGCCTGCACCAAACATAAC
EST: gi|211234744|gb|FL433588.1|FL433588
EST:     ACTGCATTACTCTCAATCGATATCCAAAGGAGAATACAAA                         ATGGGGGTTTTATTTACACCCTGCGGAAGGCTCGCCTGCACCAAACATAAC
genomic: ACTGCATTACTCTCAATCGATATCCAAAGGAGAATACAAAgtaaacgctc ... tataatgcagATGCGGGTTTTATTTACACCCTGCTGAAGGCTCGCCTGCACCAAACATAAC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GGAGAAAGAGAATTACCGATTTGGATGTAACTGAGGGTGATCTTCCATGGTGGTGTGTGGACTGCATTACTCTCAATCGATATCCAAAGGAGAATACAAAgtaaacgctcattacaattccctattttatcctcagagatgctattttcccttgatatatgatatatcttatattgtcttggtttttgatcaactacccc

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA