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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCTTTTGTCATTACCTTCTCGTTTGGTATGGGTGCCATTCCATGGCTCATGATGTCTGAGgtacgctacttctttgcacacctgatataaagcttgtataatgcctcattgcctcctagttttgacatcccaacgaagggaactatctgcacaatcaactgtctgaagctacagctcaggaacgtactgtaagaaatatctgaatgtatagttcaaactttgtgcgtttttcag

Basic information

species Zea mays
transcript GRMZM2G160504_T02
intron # 15
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G160504_T02 (Zea mays), 5'ss of exon 15
lower sequence: LOC_Os05g49260.1 (Oryza sativa), 5'ss of exon 15
TCTTTTGTCATTACCTTCTCGTTTGGTATGGGTGCCATTCCATGGCTCATGATGTCTGAGgtacgctacttctttgcacacctgatataaagcttgtataatgcctcattgcctcctagttttgacatcccaacgaagggaactatctgcacaatcaactgtctgaagctacagctcaggaacgtactgtaagaaatatctgaatgtatagttcaaactttgtgcgtttttcag
 ||| | |||| ||||| || || || |||||||||||||||||| |||||||||||||||||   | |||     || | || | |          || |||  |  |    |   ||  ||||||   | || |       |   ||||      | | ||| | ||  ||||| | |    || | ||| | || ||         |||| || ||||||  ||| ||   
GCTTATATCATCACCTTTTCCTTCGGCATGGGTGCCATTCCATGGGTCATGATGTCTGAGgtataatgctttgccccatagctcaca----------atgatgt-tagtatttttagagcattgacacatccaccat-----tttgttgca------agtatctcaggcatcagcttaag----taatctaa-agatttc---------agttaaatctttgtttgttcttag-

upper sequence: GRMZM2G160504_T02 (Zea mays), 5'ss of exon 15
lower sequence: LOC_Os05g49270.1 (Oryza sativa), 5'ss of exon 15
TCTTTTGTCATTACCTTCTCGTTTGGTATGGGTGCCATTCCATGGCTCATGATGTCTGAGgtacgctacttctttgcacacctgatataaagcttgtataatgcctcattgcctcctagttttgacatcccaacgaagg--gaactatctgcacaatcaactgtctgaagctacagctcaggaacgtactgtaagaaatatctgaatgtatagttcaaactttgtgcgtttttcag
 ||||||| ||  ||||||| || ||||||||||||||||||||| |||| ||||| ||||||     |||| | || ||      |||  || | |  |||      | ||     ||  || ||||  | | ||     | |  || ||    ||     ||||||||   ||  ||      |||   |   |                                        
GCTTTTGTAATCGCCTTCTCCTTCGGTATGGGTGCCATTCCATGGATCATAATGTCAGAGgtata--gcttcatggctcata-atcatacggcct-tggaatt-----tagctgaagagcattcacatggccatgatttttggagcatttgtcagatg----gtctgaagactcacttccaacttgtatattttcag---------------------------------------