1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' |
CTGTTATATTTGTGCTGGAAATATTGATAAAGCTGTTGAAATATGGTCCCGCACCTTGAAATCTGAAGATGGTGGGAAGATTTATGTTGATCTTCTCCAGgtacgattttgtaatagttcacattctatagcatggctcccagacagttcctaattgactagtgtggaaatgcag
species | Zea mays |
transcript | GRMZM2G152963_T01 |
intron # | 15 |
splice site | 5' |
intron type | U2 |
EST: GCACCTTGAAATCTGAAGATGGTGGGAAGATTTATGTTGATCTTCTCCAG GATTTGATGGAAAAAACCATTACTCTTGCCCTTGCTACGGGCCACAAGAGAEST: gi|211168375|gb|FK975332.1|FK975332
genomic: GCACCTTGAAATCTGAAGATGGTGGGAAGATTTATGTTGATCTTCTCCAGgtacgatttt ... ggaaatgcagGATTTGATGGAAAAAACCATTACTCTCGCCCTTGCTACGGGCCACAAGAGA
EST: CCTTGAAATCTGAAGAATGGTGGGAAAGATTTTATGTTGATCTTCTCCAG GATTTGATGGAAAAAACCATTACTCTTGCCCTTGCTACGGGCCACAAGAGAEST: gi|211168372|gb|FK975329.1|FK975329
genomic: CCTTGAAATCTGAAGA-TGGTGGGAA-GATTT-ATGTTGATCTTCTCCAGgtacgatttt ... ggaaatgcagGATTTGATGGAAAAAACCATTACTCTCGCCCTTGCTACGGGCCACAAGAGA
EST: GCACCTTGAAATCTGAAGATGGTGGGAAGATTTATGTTGATCTTCTCCAG GATTTGATGGAAAAAACCATTACTCTTGCCCTTGCTACGGGCCACAAGAGAEST: gi|211168371|gb|FK975328.1|FK975328
genomic: GCACCTTGAAATCTGAAGATGGTGGGAAGATTTATGTTGATCTTCTCCAGgtacgatttt ... ggaaatgcagGATTTGATGGAAAAAACCATTACTCTCGCCCTTGCTACGGGCCACAAGAGA
EST: GCACCTTGAAATCTGAAGATGGTGGGAAGATTTATGTTGATCTTCTCCAG GATTTGATGGAAAAAACCATTACTCTTGCCCTTGCTACGGGCCACAAGAGAEST: gi|211168376|gb|FK975333.1|FK975333
genomic: GCACCTTGAAATCTGAAGATGGTGGGAAGATTTATGTTGATCTTCTCCAGgtacgatttt ... ggaaatgcagGATTTGATGGAAAAAACCATTACTCTCGCCCTTGCTACGGGCCACAAGAGA
EST: GCACCTTGAAATCTGAAGATGGTGGGAAGATTTATGTTGATCTTCTCCAG GATTTGATGGAAAAAACCATTACTCTTGCCCTTGCTACGGGCCACAAGAGAEST: gi|19058086|gb|BM736753.1|BM736753
genomic: GCACCTTGAAATCTGAAGATGGTGGGAAGATTTATGTTGATCTTCTCCAGgtacgatttt ... ggaaatgcagGATTTGATGGAAAAAACCATTACTCTCGCCCTTGCTACGGGCCACAAGAGA
EST: GCACCTTGAAATCTGAAGATGGTGGGAAGATTTATGTTGATCTTCTCCAG GATTTGATGGAAAAAACCATTACTCTTGCCCTTGCTACGGGCCACAAGAGAEST: gi|87153798|gb|DY398587.1|DY398587
genomic: GCACCTTGAAATCTGAAGATGGTGGGAAGATTTATGTTGATCTTCTCCAGgtacgatttt ... ggaaatgcagGATTTGATGGAAAAAACCATTACTCTCGCCCTTGCTACGGGCCACAAGAGA
EST: GCACCTTGAAATCTGAAGATGGTGGGAAGATTTATGTTGATCTTCTCCAG GATTTGATGGAAAAAACCATTACTCTTGCCCTTGCTACGGGCCACAAGAGAEST: gi|22490462|gb|BU050385.1|BU050385
genomic: GCACCTTGAAATCTGAAGATGGTGGGAAGATTTATGTTGATCTTCTCCAGgtacgatttt ... ggaaatgcagGATTTGATGGAAAAAACCATTACTCTCGCCCTTGCTACGGGCCACAAGAGA
EST: GCACCTTGAAATCTGAAGATGGTGGGAAGATTTATGTTGATCTTCTCCAG GATTTGATGGAAAAAACCATTACTCTTGCCCTTGCTACGGGCCACAAGAGAEST: gi|31349999|gb|CD434356.1|CD434356
genomic: GCACCTTGAAATCTGAAGATGGTGGGAAGATTTATGTTGATCTTCTCCAGgtacgatttt ... ggaaatgcagGATTTGATGGAAAAAACCATTACTCTCGCCCTTGCTACGGGCCACAAGAGA
EST: CACCTTG-TTTCCTGAAGATGGTGGGAAGATTTATGTTGATCTTCTCCAG GATTTGATGGAAAAAACCATTACTCTTGCCCTTGCTACGGGCCACAAGAGAEST: gi|4152239|gb|AI372373.1|AI372373
genomic: CACCTTGAAAT-CTGAAGATGGTGGGAAGATTTATGTTGATCTTCTCCAGgtacgatttt ... ggaaatgcagGATTTGATGGAAAAAACCATTACTCTCGCCCTTGCTACGGGCCACAAGAGA
EST: GCACCTTGAAATCTGAAGATGGTGGGAAGATTTATGTTGATCTTCTCCAG GATTTGATGGATAAAACCATTEST: gi|211168377|gb|FK975334.1|FK975334
genomic: GCACCTTGAAATCTGAAGATGGTGGGAAGATTTATGTTGATCTTCTCCAGgtacgatttt ... ggaaatgcagGATTTGATGGAAAAAACCATT
EST: GCACCTTGAAATCTGAAGATGGTGGGAAGATTTATGTTGATCTTCTCCAG GATTTGATGGAAAAAACCATTACTCTTGCCCTTGCTACGGGCCACAAGAGA
genomic: GCACCTTGAAATCTGAAGATGGTGGGAAGATTTATGTTGATCTTCTCCAGgtacgatttt ... ggaaatgcagGATTTGATGGAAAAAACCATTACTCTCGCCCTTGCTACGGGCCACAAGAGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTGTTATATTTGTGCTGGAAATATTGATAAAGCTGTTGAAATATGGTCCCGCACCTTGAAATCTGAAGATGGTGGGAAGATTTATGTTGATCTTCTCCAGgtacgattttgtaatagttcacattctatagcatggctcccagacagttcctaattgactagtgtggaaatgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA